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Cluster: Rep_2126_CGC4

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_2126_c_0 Rep_2126_c_0_131 161852 162658 - 3.A.1.25.4
TC Rep_2126_c_0 Rep_2126_c_0_132 162655 163512 - 3.A.1.26.9
TC Rep_2126_c_0 Rep_2126_c_0_133 163503 164366 - 3.A.1.26.7
CAZyme Rep_2126_c_0 Rep_2126_c_0_134 164453 165937 - GH77
TC Rep_2126_c_0 Rep_2126_c_0_135 166032 166697 - 3.A.1.24.5
TC Rep_2126_c_0 Rep_2126_c_0_136 166687 167697 - 3.A.1.24.2
TC Rep_2126_c_0 Rep_2126_c_0_137 167881 168777 - 3.A.1.24.5
pfam Rep_2126_c_0 Rep_2126_c_0_138 168849 169691 - Acetyltransf_1 | Acetyltransf_3
TC Rep_2126_c_0 Rep_2126_c_0_139 169685 170206 - 3.D.1.8.1
TC Rep_2126_c_0 Rep_2126_c_0_140 170330 171787 - 3.A.1.2.4
TC Rep_2126_c_0 Rep_2126_c_0_141 171805 172857 - 8.A.59.2.1
TF Rep_2126_c_0 Rep_2126_c_0_142 172874 174463 - HTH_AraC | HTH_AraC
TC Rep_2126_c_0 Rep_2126_c_0_143 174581 175492 - 3.A.1.2.13
TC Rep_2126_c_0 Rep_2126_c_0_144 175550 176566 - 3.A.1.2.19
TC Rep_2126_c_0 Rep_2126_c_0_145 176585 178096 - 3.A.1.2.3
pfam Rep_2126_c_0 Rep_2126_c_0_146 178279 179412 - HipA_C | Couple_hipA
TF Rep_2126_c_0 Rep_2126_c_0_147 179399 179677 - HTH_3
TC Rep_2126_c_0 Rep_2126_c_0_148 179905 180705 + 1.A.23.2.1
Gene ID: Rep_2126_c_0_131
Type: TC
Location: 161852 - 162658 (-)
Gene ID: Rep_2126_c_0_132
Type: TC
Location: 162655 - 163512 (-)
Gene ID: Rep_2126_c_0_133
Type: TC
Location: 163503 - 164366 (-)
Gene ID: Rep_2126_c_0_134
Type: CAZyme
Location: 164453 - 165937 (-)
Gene ID: Rep_2126_c_0_135
Type: TC
Location: 166032 - 166697 (-)
Gene ID: Rep_2126_c_0_136
Type: TC
Location: 166687 - 167697 (-)
Gene ID: Rep_2126_c_0_137
Type: TC
Location: 167881 - 168777 (-)
Gene ID: Rep_2126_c_0_138
Type: pfam
Location: 168849 - 169691 (-)
Gene ID: Rep_2126_c_0_139
Type: TC
Location: 169685 - 170206 (-)
Gene ID: Rep_2126_c_0_140
Type: TC
Location: 170330 - 171787 (-)
Gene ID: Rep_2126_c_0_141
Type: TC
Location: 171805 - 172857 (-)
Gene ID: Rep_2126_c_0_142
Type: TF
Location: 172874 - 174463 (-)
Gene ID: Rep_2126_c_0_143
Type: TC
Location: 174581 - 175492 (-)
Gene ID: Rep_2126_c_0_144
Type: TC
Location: 175550 - 176566 (-)
Gene ID: Rep_2126_c_0_145
Type: TC
Location: 176585 - 178096 (-)
Gene ID: Rep_2126_c_0_146
Type: pfam
Location: 178279 - 179412 (-)
Gene ID: Rep_2126_c_0_147
Type: TF
Location: 179399 - 179677 (-)
Gene ID: Rep_2126_c_0_148
Type: TC
Location: 179905 - 180705 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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