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Cluster: Rep_2126_CGC37

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_2126_c_13 Rep_2126_c_13_1 109 1575 + GH29
NULL(UNKNOWN) Rep_2126_c_13 Rep_2126_c_13_2 1591 1716 + NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_2126_c_13 Rep_2126_c_13_3 1704 3506 + 8.A.59.2.1
TF Rep_2126_c_13 Rep_2126_c_13_4 3499 5037 + HTH_AraC
TC Rep_2126_c_13 Rep_2126_c_13_5 5251 6186 + 3.A.1.1.29
TC Rep_2126_c_13 Rep_2126_c_13_6 6202 7098 + 3.A.1.1.29
TC Rep_2126_c_13 Rep_2126_c_13_7 7162 8802 + 3.A.1.1.29
pfam Rep_2126_c_13 Rep_2126_c_13_8 9087 10055 + Transposase_31
CAZyme Rep_2126_c_13 Rep_2126_c_13_9 10225 12558 + GH31_3
CAZyme Rep_2126_c_13 Rep_2126_c_13_10 12595 14748 + GH3
Gene ID: Rep_2126_c_13_1
Type: CAZyme
Location: 109 - 1575 (+)
Gene ID: Rep_2126_c_13_2
Type:
Location: 1591 - 1716 (+)
Gene ID: Rep_2126_c_13_3
Type: TC
Location: 1704 - 3506 (+)
Gene ID: Rep_2126_c_13_4
Type: TF
Location: 3499 - 5037 (+)
Gene ID: Rep_2126_c_13_5
Type: TC
Location: 5251 - 6186 (+)
Gene ID: Rep_2126_c_13_6
Type: TC
Location: 6202 - 7098 (+)
Gene ID: Rep_2126_c_13_7
Type: TC
Location: 7162 - 8802 (+)
Gene ID: Rep_2126_c_13_8
Type: pfam
Location: 9087 - 10055 (+)
Gene ID: Rep_2126_c_13_9
Type: CAZyme
Location: 10225 - 12558 (+)
Gene ID: Rep_2126_c_13_10
Type: CAZyme
Location: 12595 - 14748 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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