Cluster: Rep_2126_CGC28
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 3
- Substrate:
- Genome ID: Rep_2126
- CGC Family ID: CGCFAM_03636
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_2126_c_8 | Rep_2126_c_8_27 | 41090 | 41644 | - | 3.A.1.25.5 |
| CAZyme | Rep_2126_c_8 | Rep_2126_c_8_28 | 42050 | 43837 | - | GH2 |
| CAZyme | Rep_2126_c_8 | Rep_2126_c_8_29 | 43852 | 45555 | - | GH154 |
| TC | Rep_2126_c_8 | Rep_2126_c_8_30 | 45601 | 46446 | - | 3.A.1.1.11 |
| TC | Rep_2126_c_8 | Rep_2126_c_8_31 | 46463 | 47371 | - | 3.A.1.1.23 |
| STP | Rep_2126_c_8 | Rep_2126_c_8_32 | 47478 | 48764 | - | SBP_bac_1 |
| TC | Rep_2126_c_8 | Rep_2126_c_8_33 | 49036 | 50856 | + | 8.A.59.2.1 |
| TF | Rep_2126_c_8 | Rep_2126_c_8_34 | 50853 | 52445 | + | HTH_AraC | HTH_AraC |
| pfam | Rep_2126_c_8 | Rep_2126_c_8_35 | 52518 | 53303 | - | DUF7402 |
| CAZyme | Rep_2126_c_8 | Rep_2126_c_8_36 | 53344 | 55461 | - | CBM67 | GH78 |
| NULL(UNKNOWN) | Rep_2126_c_8 | Rep_2126_c_8_37 | 55573 | 55692 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | Rep_2126_c_8 | Rep_2126_c_8_38 | 55685 | 58402 | - | FtsX | FtsX |
| TC | Rep_2126_c_8 | Rep_2126_c_8_39 | 58399 | 59082 | - | 3.A.1.122.14 |
Gene ID: Rep_2126_c_8_27
Type: TC
Location: 41090 - 41644 (-)
Type: TC
Location: 41090 - 41644 (-)
Gene ID: Rep_2126_c_8_28
Type: CAZyme
Location: 42050 - 43837 (-)
Type: CAZyme
Location: 42050 - 43837 (-)
Gene ID: Rep_2126_c_8_29
Type: CAZyme
Location: 43852 - 45555 (-)
Type: CAZyme
Location: 43852 - 45555 (-)
Gene ID: Rep_2126_c_8_30
Type: TC
Location: 45601 - 46446 (-)
Type: TC
Location: 45601 - 46446 (-)
Gene ID: Rep_2126_c_8_31
Type: TC
Location: 46463 - 47371 (-)
Type: TC
Location: 46463 - 47371 (-)
Gene ID: Rep_2126_c_8_32
Type: STP
Location: 47478 - 48764 (-)
Type: STP
Location: 47478 - 48764 (-)
Gene ID: Rep_2126_c_8_33
Type: TC
Location: 49036 - 50856 (+)
Type: TC
Location: 49036 - 50856 (+)
Gene ID: Rep_2126_c_8_34
Type: TF
Location: 50853 - 52445 (+)
Type: TF
Location: 50853 - 52445 (+)
Gene ID: Rep_2126_c_8_35
Type: pfam
Location: 52518 - 53303 (-)
Type: pfam
Location: 52518 - 53303 (-)
Gene ID: Rep_2126_c_8_36
Type: CAZyme
Location: 53344 - 55461 (-)
Type: CAZyme
Location: 53344 - 55461 (-)
Gene ID: Rep_2126_c_8_37
Type:
Location: 55573 - 55692 (-)
Type:
Location: 55573 - 55692 (-)
Gene ID: Rep_2126_c_8_38
Type: pfam
Location: 55685 - 58402 (-)
Type: pfam
Location: 55685 - 58402 (-)
Gene ID: Rep_2126_c_8_39
Type: TC
Location: 58399 - 59082 (-)
Type: TC
Location: 58399 - 59082 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Marvinbryantia
Species
Marvinbryantia sp900550755
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.