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Cluster: Rep_2126_CGC17

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_2126_c_4 Rep_2126_c_4_131 144856 145872 + 2.A.56.1.2
TC Rep_2126_c_4 Rep_2126_c_4_132 145869 146348 + 2.A.56.1.6
TC Rep_2126_c_4 Rep_2126_c_4_133 146350 147657 + 2.A.56.1.5
pfam Rep_2126_c_4 Rep_2126_c_4_134 147965 149227 + SBP_bac_1 | SBP_bac_8
TC Rep_2126_c_4 Rep_2126_c_4_135 149335 150216 + 3.A.1.1.45
TC Rep_2126_c_4 Rep_2126_c_4_136 150216 151076 + 3.A.1.1.45
CAZyme Rep_2126_c_4 Rep_2126_c_4_137 151209 152726 + GH32
CAZyme Rep_2126_c_4 Rep_2126_c_4_138 152738 154606 + GH13_4
CAZyme Rep_2126_c_4 Rep_2126_c_4_139 154727 156916 + GH36
TC Rep_2126_c_4 Rep_2126_c_4_140 157070 158857 + 8.A.59.2.1
TF Rep_2126_c_4 Rep_2126_c_4_141 158830 160422 + HTH_AraC | HTH_AraC
STP Rep_2126_c_4 Rep_2126_c_4_142 160568 161818 + SBP_bac_1
TC Rep_2126_c_4 Rep_2126_c_4_143 161889 162755 + 3.A.1.1.42
TC Rep_2126_c_4 Rep_2126_c_4_144 162752 163651 + 3.A.1.1.34
CAZyme Rep_2126_c_4 Rep_2126_c_4_145 163655 165754 + GH36
Gene ID: Rep_2126_c_4_131
Type: TC
Location: 144856 - 145872 (+)
Gene ID: Rep_2126_c_4_132
Type: TC
Location: 145869 - 146348 (+)
Gene ID: Rep_2126_c_4_133
Type: TC
Location: 146350 - 147657 (+)
Gene ID: Rep_2126_c_4_134
Type: pfam
Location: 147965 - 149227 (+)
Gene ID: Rep_2126_c_4_135
Type: TC
Location: 149335 - 150216 (+)
Gene ID: Rep_2126_c_4_136
Type: TC
Location: 150216 - 151076 (+)
Gene ID: Rep_2126_c_4_137
Type: CAZyme
Location: 151209 - 152726 (+)
Gene ID: Rep_2126_c_4_138
Type: CAZyme
Location: 152738 - 154606 (+)
Gene ID: Rep_2126_c_4_139
Type: CAZyme
Location: 154727 - 156916 (+)
Gene ID: Rep_2126_c_4_140
Type: TC
Location: 157070 - 158857 (+)
Gene ID: Rep_2126_c_4_141
Type: TF
Location: 158830 - 160422 (+)
Gene ID: Rep_2126_c_4_142
Type: STP
Location: 160568 - 161818 (+)
Gene ID: Rep_2126_c_4_143
Type: TC
Location: 161889 - 162755 (+)
Gene ID: Rep_2126_c_4_144
Type: TC
Location: 162752 - 163651 (+)
Gene ID: Rep_2126_c_4_145
Type: CAZyme
Location: 163655 - 165754 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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