Cluster: Rep_2126_CGC16
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_2126
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_2126_c_4 | Rep_2126_c_4_119 | 131806 | 133263 | + | 3.A.1.1.27 |
| TC | Rep_2126_c_4 | Rep_2126_c_4_120 | 133263 | 134117 | + | 3.A.1.1.27 |
| NULL(UNKNOWN) | Rep_2126_c_4 | Rep_2126_c_4_121 | 134148 | 135986 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| NULL(UNKNOWN) | Rep_2126_c_4 | Rep_2126_c_4_122 | 135959 | 136183 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_2126_c_4 | Rep_2126_c_4_123 | 136399 | 137544 | + | GH53 |
Gene ID: Rep_2126_c_4_119
Type: TC
Location: 131806 - 133263 (+)
Type: TC
Location: 131806 - 133263 (+)
Gene ID: Rep_2126_c_4_120
Type: TC
Location: 133263 - 134117 (+)
Type: TC
Location: 133263 - 134117 (+)
Gene ID: Rep_2126_c_4_121
Type:
Location: 134148 - 135986 (+)
Type:
Location: 134148 - 135986 (+)
Gene ID: Rep_2126_c_4_122
Type:
Location: 135959 - 136183 (+)
Type:
Location: 135959 - 136183 (+)
Gene ID: Rep_2126_c_4_123
Type: CAZyme
Location: 136399 - 137544 (+)
Type: CAZyme
Location: 136399 - 137544 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Marvinbryantia
Species
Marvinbryantia sp900550755
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_2126_c_4_121 | vegetarian > vegan | 1.29294 | 0.01287 |