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Cluster: Rep_2125_CGC27

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_2125_c_416 Rep_2125_c_416_1 234 1919 + 3.A.1.1.9
TC Rep_2125_c_416 Rep_2125_c_416_2 1995 2912 + 3.A.1.1.9
TC Rep_2125_c_416 Rep_2125_c_416_3 2925 3812 + 3.A.1.1.9
CAZyme Rep_2125_c_416 Rep_2125_c_416_4 3828 4901 + GH172
CAZyme Rep_2125_c_416 Rep_2125_c_416_5 4906 8094 + GH38
CAZyme Rep_2125_c_416 Rep_2125_c_416_6 8109 9848 + GH2
TC Rep_2125_c_416 Rep_2125_c_416_7 9916 11661 + 8.A.59.2.1
TF Rep_2125_c_416 Rep_2125_c_416_8 11712 13241 + HTH_AraC | HTH_AraC
TF Rep_2125_c_416 Rep_2125_c_416_9 13553 13936 + GntR
TC Rep_2125_c_416 Rep_2125_c_416_10 13929 14798 + 3.A.1.132.6
Gene ID: Rep_2125_c_416_1
Type: TC
Location: 234 - 1919 (+)
Gene ID: Rep_2125_c_416_2
Type: TC
Location: 1995 - 2912 (+)
Gene ID: Rep_2125_c_416_3
Type: TC
Location: 2925 - 3812 (+)
Gene ID: Rep_2125_c_416_4
Type: CAZyme
Location: 3828 - 4901 (+)
Gene ID: Rep_2125_c_416_5
Type: CAZyme
Location: 4906 - 8094 (+)
Gene ID: Rep_2125_c_416_6
Type: CAZyme
Location: 8109 - 9848 (+)
Gene ID: Rep_2125_c_416_7
Type: TC
Location: 9916 - 11661 (+)
Gene ID: Rep_2125_c_416_8
Type: TF
Location: 11712 - 13241 (+)
Gene ID: Rep_2125_c_416_9
Type: TF
Location: 13553 - 13936 (+)
Gene ID: Rep_2125_c_416_10
Type: TC
Location: 13929 - 14798 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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