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Cluster: Rep_2121_CGC9

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_2121_c_34 Rep_2121_c_34_3 1509 3392 - 1.A.33.1.4
pfam Rep_2121_c_34 Rep_2121_c_34_4 3449 4060 - GrpE
TF Rep_2121_c_34 Rep_2121_c_34_5 4090 5115 - 0043758
CAZyme Rep_2121_c_34 Rep_2121_c_34_6 5324 7339 - GH42
CAZyme Rep_2121_c_34 Rep_2121_c_34_7 7395 9038 - CBM61 | GH53
TC Rep_2121_c_34 Rep_2121_c_34_8 9053 9901 - 3.A.1.1.26
TC Rep_2121_c_34 Rep_2121_c_34_9 9903 10814 - 3.A.1.1.22
STP Rep_2121_c_34 Rep_2121_c_34_10 10819 12033 - SBP_bac_1
CAZyme Rep_2121_c_34 Rep_2121_c_34_11 12047 13120 - GH53
Gene ID: Rep_2121_c_34_3
Type: TC
Location: 1509 - 3392 (-)
Gene ID: Rep_2121_c_34_4
Type: pfam
Location: 3449 - 4060 (-)
Gene ID: Rep_2121_c_34_5
Type: TF
Location: 4090 - 5115 (-)
Gene ID: Rep_2121_c_34_6
Type: CAZyme
Location: 5324 - 7339 (-)
Gene ID: Rep_2121_c_34_7
Type: CAZyme
Location: 7395 - 9038 (-)
Gene ID: Rep_2121_c_34_8
Type: TC
Location: 9053 - 9901 (-)
Gene ID: Rep_2121_c_34_9
Type: TC
Location: 9903 - 10814 (-)
Gene ID: Rep_2121_c_34_10
Type: STP
Location: 10819 - 12033 (-)
Gene ID: Rep_2121_c_34_11
Type: CAZyme
Location: 12047 - 13120 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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