dbCAN Logo

Cluster: Rep_2121_CGC6

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_2121_c_18 Rep_2121_c_18_18 15793 17280 - 2.A.25.1.2
TC Rep_2121_c_18 Rep_2121_c_18_19 17303 18403 - 3.D.2.1.1
TF Rep_2121_c_18 Rep_2121_c_18_20 18448 19155 - HTH_AraC | HTH_AraC
TC Rep_2121_c_18 Rep_2121_c_18_21 19133 20479 - 8.A.59.2.1
NULL(UNKNOWN) Rep_2121_c_18 Rep_2121_c_18_22 20436 20675 - NULL(UNKNOWN)
[View Structural Homologs]
pfam Rep_2121_c_18 Rep_2121_c_18_23 20665 21090 - DUF3783
CAZyme Rep_2121_c_18 Rep_2121_c_18_24 21217 22635 - GH32
TC Rep_2121_c_18 Rep_2121_c_18_25 22668 24053 - 4.A.1.2.9
Gene ID: Rep_2121_c_18_18
Type: TC
Location: 15793 - 17280 (-)
Gene ID: Rep_2121_c_18_19
Type: TC
Location: 17303 - 18403 (-)
Gene ID: Rep_2121_c_18_20
Type: TF
Location: 18448 - 19155 (-)
Gene ID: Rep_2121_c_18_21
Type: TC
Location: 19133 - 20479 (-)
Gene ID: Rep_2121_c_18_22
Type:
Location: 20436 - 20675 (-)
Gene ID: Rep_2121_c_18_23
Type: pfam
Location: 20665 - 21090 (-)
Gene ID: Rep_2121_c_18_24
Type: CAZyme
Location: 21217 - 22635 (-)
Gene ID: Rep_2121_c_18_25
Type: TC
Location: 22668 - 24053 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

← Back to Cluster List