dbCAN Logo

Cluster: Rep_2121_CGC4

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_2121_c_7 Rep_2121_c_7_28 27734 28219 - 4.A.3.2.5
TC Rep_2121_c_7 Rep_2121_c_7_29 28271 29020 - 9.B.158.1.1
TC Rep_2121_c_7 Rep_2121_c_7_30 29094 30563 - 4.A.1.1.7
STP Rep_2121_c_7 Rep_2121_c_7_31 30730 33366 - AAA
CAZyme Rep_2121_c_7 Rep_2121_c_7_32 33498 34967 - GH1
CAZyme Rep_2121_c_7 Rep_2121_c_7_33 34986 36173 - GH170
TC Rep_2121_c_7 Rep_2121_c_7_34 36246 37565 - 4.A.3.2.2
TC Rep_2121_c_7 Rep_2121_c_7_35 37594 37890 - 4.A.3.2.3
TC Rep_2121_c_7 Rep_2121_c_7_36 37932 38237 - 4.A.3.2.7
pfam Rep_2121_c_7 Rep_2121_c_7_37 38562 39191 + Hydrolase | HAD | Hydrolase_like | HAD_2
CAZyme Rep_2121_c_7 Rep_2121_c_7_38 39261 41729 - GT35
Gene ID: Rep_2121_c_7_28
Type: TC
Location: 27734 - 28219 (-)
Gene ID: Rep_2121_c_7_29
Type: TC
Location: 28271 - 29020 (-)
Gene ID: Rep_2121_c_7_30
Type: TC
Location: 29094 - 30563 (-)
Gene ID: Rep_2121_c_7_31
Type: STP
Location: 30730 - 33366 (-)
Gene ID: Rep_2121_c_7_32
Type: CAZyme
Location: 33498 - 34967 (-)
Gene ID: Rep_2121_c_7_33
Type: CAZyme
Location: 34986 - 36173 (-)
Gene ID: Rep_2121_c_7_34
Type: TC
Location: 36246 - 37565 (-)
Gene ID: Rep_2121_c_7_35
Type: TC
Location: 37594 - 37890 (-)
Gene ID: Rep_2121_c_7_36
Type: TC
Location: 37932 - 38237 (-)
Gene ID: Rep_2121_c_7_37
Type: pfam
Location: 38562 - 39191 (+)
Gene ID: Rep_2121_c_7_38
Type: CAZyme
Location: 39261 - 41729 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

← Back to Cluster List