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Cluster: Rep_2121_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_2121_c_0 Rep_2121_c_0_63 73737 74000 + 8.A.8.1.6
pfam Rep_2121_c_0 Rep_2121_c_0_64 74069 74638 + dTDP_sugar_isom
TC Rep_2121_c_0 Rep_2121_c_0_65 74643 76031 + 3.A.1.104.1
TC Rep_2121_c_0 Rep_2121_c_0_66 76042 77334 + 3.A.1.103.6
CAZyme Rep_2121_c_0 Rep_2121_c_0_67 77337 80216 + GT2 | GT2
pfam Rep_2121_c_0 Rep_2121_c_0_68 80226 81134 + RrnaAD | NodS | Methyltransf_11 | Methyltransf_12 | Methyltransf_23 | Methyltransf_25 | Methyltransf_31
NULL(UNKNOWN) Rep_2121_c_0 Rep_2121_c_0_69 81144 82535 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme Rep_2121_c_0 Rep_2121_c_0_70 82561 84372 + GT2 | GT2
CAZyme Rep_2121_c_0 Rep_2121_c_0_71 84377 86146 + GT2
CAZyme Rep_2121_c_0 Rep_2121_c_0_72 86160 87119 + GT2
TC Rep_2121_c_0 Rep_2121_c_0_73 87215 88627 + 9.B.18.1.1
pfam Rep_2121_c_0 Rep_2121_c_0_74 88645 89793 + LytR_cpsA_psr
CAZyme Rep_2121_c_0 Rep_2121_c_0_75 89861 90778 + GT2
Gene ID: Rep_2121_c_0_63
Type: TC
Location: 73737 - 74000 (+)
Gene ID: Rep_2121_c_0_64
Type: pfam
Location: 74069 - 74638 (+)
Gene ID: Rep_2121_c_0_65
Type: TC
Location: 74643 - 76031 (+)
Gene ID: Rep_2121_c_0_66
Type: TC
Location: 76042 - 77334 (+)
Gene ID: Rep_2121_c_0_67
Type: CAZyme
Location: 77337 - 80216 (+)
Gene ID: Rep_2121_c_0_68
Type: pfam
Location: 80226 - 81134 (+)
Gene ID: Rep_2121_c_0_69
Type:
Location: 81144 - 82535 (+)
Gene ID: Rep_2121_c_0_70
Type: CAZyme
Location: 82561 - 84372 (+)
Gene ID: Rep_2121_c_0_71
Type: CAZyme
Location: 84377 - 86146 (+)
Gene ID: Rep_2121_c_0_72
Type: CAZyme
Location: 86160 - 87119 (+)
Gene ID: Rep_2121_c_0_73
Type: TC
Location: 87215 - 88627 (+)
Gene ID: Rep_2121_c_0_74
Type: pfam
Location: 88645 - 89793 (+)
Gene ID: Rep_2121_c_0_75
Type: CAZyme
Location: 89861 - 90778 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_2121_c_0_64 vegetarian > vegan 1.05809 0.02242

🧭 Explore Read Mapping of CGC

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