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Cluster: Rep_2087_CGC2

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_2087_c_2 Rep_2087_c_2_79 80057 81349 + 3.A.1.1.44
TC Rep_2087_c_2 Rep_2087_c_2_80 81365 82261 + 3.A.1.1.7
TC Rep_2087_c_2 Rep_2087_c_2_81 82276 83112 + 3.A.1.1.34
CAZyme Rep_2087_c_2 Rep_2087_c_2_82 83148 85355 + GH36
pfam Rep_2087_c_2 Rep_2087_c_2_83 85352 85825 + DUF6106
CAZyme Rep_2087_c_2 Rep_2087_c_2_84 85818 87656 + GH13_4
TC Rep_2087_c_2 Rep_2087_c_2_85 87676 88788 + 3.A.1.1.22
Gene ID: Rep_2087_c_2_79
Type: TC
Location: 80057 - 81349 (+)
Gene ID: Rep_2087_c_2_80
Type: TC
Location: 81365 - 82261 (+)
Gene ID: Rep_2087_c_2_81
Type: TC
Location: 82276 - 83112 (+)
Gene ID: Rep_2087_c_2_82
Type: CAZyme
Location: 83148 - 85355 (+)
Gene ID: Rep_2087_c_2_83
Type: pfam
Location: 85352 - 85825 (+)
Gene ID: Rep_2087_c_2_84
Type: CAZyme
Location: 85818 - 87656 (+)
Gene ID: Rep_2087_c_2_85
Type: TC
Location: 87676 - 88788 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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