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Cluster: Rep_2087_CGC19

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_2087_c_44 Rep_2087_c_44_1 145 2778 - 4.A.2.1.17
pfam Rep_2087_c_44 Rep_2087_c_44_2 3007 3465 - DUF212
CAZyme Rep_2087_c_44 Rep_2087_c_44_3 3511 4956 - GT5
STP Rep_2087_c_44 Rep_2087_c_44_4 5044 5853 - Response_reg | Spo0A_C
TC Rep_2087_c_44 Rep_2087_c_44_5 5948 7360 - 2.A.66.1.33
pfam Rep_2087_c_44 Rep_2087_c_44_6 7380 8504 - Cytidylate_kin2
TC Rep_2087_c_44 Rep_2087_c_44_7 8520 9962 - 2.A.111.1.2
TC Rep_2087_c_44 Rep_2087_c_44_8 10238 10960 + 9.B.120.1.2
pfam Rep_2087_c_44 Rep_2087_c_44_9 10989 11816 - PHP
NULL(UNKNOWN) Rep_2087_c_44 Rep_2087_c_44_10 11915 12886 - NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_2087_c_44 Rep_2087_c_44_11 12977 14068 - 3.A.1.1.5
Gene ID: Rep_2087_c_44_1
Type: TC
Location: 145 - 2778 (-)
Gene ID: Rep_2087_c_44_2
Type: pfam
Location: 3007 - 3465 (-)
Gene ID: Rep_2087_c_44_3
Type: CAZyme
Location: 3511 - 4956 (-)
Gene ID: Rep_2087_c_44_4
Type: STP
Location: 5044 - 5853 (-)
Gene ID: Rep_2087_c_44_5
Type: TC
Location: 5948 - 7360 (-)
Gene ID: Rep_2087_c_44_6
Type: pfam
Location: 7380 - 8504 (-)
Gene ID: Rep_2087_c_44_7
Type: TC
Location: 8520 - 9962 (-)
Gene ID: Rep_2087_c_44_8
Type: TC
Location: 10238 - 10960 (+)
Gene ID: Rep_2087_c_44_9
Type: pfam
Location: 10989 - 11816 (-)
Gene ID: Rep_2087_c_44_10
Type:
Location: 11915 - 12886 (-)
Gene ID: Rep_2087_c_44_11
Type: TC
Location: 12977 - 14068 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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