Cluster: Rep_2087_CGC17
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 2
- Substrate:
- Genome ID: Rep_2087
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_2087_c_40 | Rep_2087_c_40_12 | 11712 | 14126 | + | CBM48 | GH13_9 |
| pfam | Rep_2087_c_40 | Rep_2087_c_40_13 | 14205 | 15077 | + | MS_channel_2nd | MS_channel_1st_1 | MS_channel_3rd | MS_channel_1st |
| STP | Rep_2087_c_40 | Rep_2087_c_40_14 | 15095 | 15628 | + | HD |
| CAZyme | Rep_2087_c_40 | Rep_2087_c_40_15 | 15757 | 16929 | + | CE4 |
| pfam | Rep_2087_c_40 | Rep_2087_c_40_16 | 17010 | 17813 | - | Polysacc_deac_1 |
| pfam | Rep_2087_c_40 | Rep_2087_c_40_17 | 17854 | 18351 | - | PNPOx_N | Pyridox_ox_2 |
| TC | Rep_2087_c_40 | Rep_2087_c_40_18 | 18394 | 19932 | - | 2.A.68.1.1 |
Gene ID: Rep_2087_c_40_12
Type: CAZyme
Location: 11712 - 14126 (+)
Type: CAZyme
Location: 11712 - 14126 (+)
Gene ID: Rep_2087_c_40_13
Type: pfam
Location: 14205 - 15077 (+)
Type: pfam
Location: 14205 - 15077 (+)
Gene ID: Rep_2087_c_40_14
Type: STP
Location: 15095 - 15628 (+)
Type: STP
Location: 15095 - 15628 (+)
Gene ID: Rep_2087_c_40_15
Type: CAZyme
Location: 15757 - 16929 (+)
Type: CAZyme
Location: 15757 - 16929 (+)
Gene ID: Rep_2087_c_40_16
Type: pfam
Location: 17010 - 17813 (-)
Type: pfam
Location: 17010 - 17813 (-)
Gene ID: Rep_2087_c_40_17
Type: pfam
Location: 17854 - 18351 (-)
Type: pfam
Location: 17854 - 18351 (-)
Gene ID: Rep_2087_c_40_18
Type: TC
Location: 18394 - 19932 (-)
Type: TC
Location: 18394 - 19932 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Alitiscatomonas
Species
Alitiscatomonas sp902477765
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.