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Cluster: Rep_2087_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_2087_c_0 Rep_2087_c_0_40 46709 47704 + 8.A.5.1.6
TF Rep_2087_c_0 Rep_2087_c_0_41 47803 49416 + HTH_AraC | HTH_AraC
TC Rep_2087_c_0 Rep_2087_c_0_42 49413 51182 + 8.A.59.2.1
STP Rep_2087_c_0 Rep_2087_c_0_43 51182 52147 + Peripla_BP_1
TC Rep_2087_c_0 Rep_2087_c_0_44 52160 53173 + 3.A.1.2.3
TC Rep_2087_c_0 Rep_2087_c_0_45 53293 54462 + 3.A.1.2.3
NULL(UNKNOWN) Rep_2087_c_0 Rep_2087_c_0_46 54468 54629 + NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_2087_c_0 Rep_2087_c_0_47 54604 56121 + 3.A.1.2.3
TC Rep_2087_c_0 Rep_2087_c_0_48 56141 57157 + 3.A.1.2.3
pfam Rep_2087_c_0 Rep_2087_c_0_49 57160 57519 + Flg_new
pfam Rep_2087_c_0 Rep_2087_c_0_50 57691 58209 - Acetyltransf_1
CAZyme Rep_2087_c_0 Rep_2087_c_0_51 58385 59677 + GH3
Gene ID: Rep_2087_c_0_40
Type: TC
Location: 46709 - 47704 (+)
Gene ID: Rep_2087_c_0_41
Type: TF
Location: 47803 - 49416 (+)
Gene ID: Rep_2087_c_0_42
Type: TC
Location: 49413 - 51182 (+)
Gene ID: Rep_2087_c_0_43
Type: STP
Location: 51182 - 52147 (+)
Gene ID: Rep_2087_c_0_44
Type: TC
Location: 52160 - 53173 (+)
Gene ID: Rep_2087_c_0_45
Type: TC
Location: 53293 - 54462 (+)
Gene ID: Rep_2087_c_0_46
Type:
Location: 54468 - 54629 (+)
Gene ID: Rep_2087_c_0_47
Type: TC
Location: 54604 - 56121 (+)
Gene ID: Rep_2087_c_0_48
Type: TC
Location: 56141 - 57157 (+)
Gene ID: Rep_2087_c_0_49
Type: pfam
Location: 57160 - 57519 (+)
Gene ID: Rep_2087_c_0_50
Type: pfam
Location: 57691 - 58209 (-)
Gene ID: Rep_2087_c_0_51
Type: CAZyme
Location: 58385 - 59677 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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