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Cluster: Rep_2083_CGC2

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_2083_c_0 Rep_2083_c_0_86 110721 112022 + CE4
TF Rep_2083_c_0 Rep_2083_c_0_87 112084 113058 - HTH_1
pfam Rep_2083_c_0 Rep_2083_c_0_88 113278 113760 + DctQ
TC Rep_2083_c_0 Rep_2083_c_0_89 113757 115055 + 2.A.56.1.1
TC Rep_2083_c_0 Rep_2083_c_0_90 115110 116207 + 2.A.56.1.3
Gene ID: Rep_2083_c_0_86
Type: CAZyme
Location: 110721 - 112022 (+)
Gene ID: Rep_2083_c_0_87
Type: TF
Location: 112084 - 113058 (-)
Gene ID: Rep_2083_c_0_88
Type: pfam
Location: 113278 - 113760 (+)
Gene ID: Rep_2083_c_0_89
Type: TC
Location: 113757 - 115055 (+)
Gene ID: Rep_2083_c_0_90
Type: TC
Location: 115110 - 116207 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_2083_c_0_90 vegetarian > vegan 1.70437 0.01684

🧭 Explore Read Mapping of CGC

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