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Cluster: Rep_2083_CGC17

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_2083_c_20 Rep_2083_c_20_26 25261 25908 - 2.A.38.4.6
TC Rep_2083_c_20 Rep_2083_c_20_27 25928 27259 - 2.A.38.4.1
STP Rep_2083_c_20 Rep_2083_c_20_28 27514 28548 + ATPase_2
pfam Rep_2083_c_20 Rep_2083_c_20_29 28572 29672 + DUF3810
CAZyme Rep_2083_c_20 Rep_2083_c_20_30 29790 32438 + CBM48 | GH13_9
pfam Rep_2083_c_20 Rep_2083_c_20_31 32454 33761 - HATPase_c_5
TF Rep_2083_c_20 Rep_2083_c_20_32 33816 34556 - LytTR
TC Rep_2083_c_20 Rep_2083_c_20_33 34722 36179 + 2.A.21.8.2
TC Rep_2083_c_20 Rep_2083_c_20_34 36248 37585 - 2.A.66.1.33
Gene ID: Rep_2083_c_20_26
Type: TC
Location: 25261 - 25908 (-)
Gene ID: Rep_2083_c_20_27
Type: TC
Location: 25928 - 27259 (-)
Gene ID: Rep_2083_c_20_28
Type: STP
Location: 27514 - 28548 (+)
Gene ID: Rep_2083_c_20_29
Type: pfam
Location: 28572 - 29672 (+)
Gene ID: Rep_2083_c_20_30
Type: CAZyme
Location: 29790 - 32438 (+)
Gene ID: Rep_2083_c_20_31
Type: pfam
Location: 32454 - 33761 (-)
Gene ID: Rep_2083_c_20_32
Type: TF
Location: 33816 - 34556 (-)
Gene ID: Rep_2083_c_20_33
Type: TC
Location: 34722 - 36179 (+)
Gene ID: Rep_2083_c_20_34
Type: TC
Location: 36248 - 37585 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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