Cluster: Rep_2083_CGC15
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_2083
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_2083_c_18 | Rep_2083_c_18_13 | 16389 | 17459 | + | 2.A.80.1.2 |
| pfam | Rep_2083_c_18 | Rep_2083_c_18_14 | 17476 | 17910 | + | TctB |
| TC | Rep_2083_c_18 | Rep_2083_c_18_15 | 17939 | 19429 | + | 2.A.80.1.1 |
| pfam | Rep_2083_c_18 | Rep_2083_c_18_16 | 19472 | 20671 | + | MR_MLE_N | MR_MLE_C |
| TC | Rep_2083_c_18 | Rep_2083_c_18_17 | 20930 | 22366 | + | 3.A.1.103.6 |
| CAZyme | Rep_2083_c_18 | Rep_2083_c_18_18 | 22385 | 26416 | + | GT27 |
Gene ID: Rep_2083_c_18_13
Type: TC
Location: 16389 - 17459 (+)
Type: TC
Location: 16389 - 17459 (+)
Gene ID: Rep_2083_c_18_14
Type: pfam
Location: 17476 - 17910 (+)
Type: pfam
Location: 17476 - 17910 (+)
Gene ID: Rep_2083_c_18_15
Type: TC
Location: 17939 - 19429 (+)
Type: TC
Location: 17939 - 19429 (+)
Gene ID: Rep_2083_c_18_16
Type: pfam
Location: 19472 - 20671 (+)
Type: pfam
Location: 19472 - 20671 (+)
Gene ID: Rep_2083_c_18_17
Type: TC
Location: 20930 - 22366 (+)
Type: TC
Location: 20930 - 22366 (+)
Gene ID: Rep_2083_c_18_18
Type: CAZyme
Location: 22385 - 26416 (+)
Type: CAZyme
Location: 22385 - 26416 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Brotaphodocola
Species
Brotaphodocola sp003478505
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_2083_c_18_13 | vegetarian > vegan | 1.54797 | 0.01684 |
| Rep_2083_c_18_14 | vegetarian > vegan | 1.16208 | 0.01684 |
| Rep_2083_c_18_15 | vegetarian > vegan | 1.33294 | 0.01684 |
| Rep_2083_c_18_16 | vegetarian > vegan | 1.48487 | 0.01684 |