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Cluster: Rep_2067_CGC56

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_2067_c_43 Rep_2067_c_43_3 1895 2797 - 3.A.1.3.28
TC Rep_2067_c_43 Rep_2067_c_43_4 2894 3670 - 3.A.1.3.13
TC Rep_2067_c_43 Rep_2067_c_43_5 3817 4494 - 3.A.1.3.14
STP Rep_2067_c_43 Rep_2067_c_43_6 4714 4953 - PTS-HPr
TF Rep_2067_c_43 Rep_2067_c_43_7 5105 6634 - HTH_AraC | HTH_AraC
TC Rep_2067_c_43 Rep_2067_c_43_8 6631 8442 - 8.A.59.2.1
pfam Rep_2067_c_43 Rep_2067_c_43_9 8445 9773 - PGM_PMM_IV | PGM_PMM_I | PGM_PMM_II | PGM_PMM_III
CAZyme Rep_2067_c_43 Rep_2067_c_43_10 10054 11376 - GH4
Gene ID: Rep_2067_c_43_3
Type: TC
Location: 1895 - 2797 (-)
Gene ID: Rep_2067_c_43_4
Type: TC
Location: 2894 - 3670 (-)
Gene ID: Rep_2067_c_43_5
Type: TC
Location: 3817 - 4494 (-)
Gene ID: Rep_2067_c_43_6
Type: STP
Location: 4714 - 4953 (-)
Gene ID: Rep_2067_c_43_7
Type: TF
Location: 5105 - 6634 (-)
Gene ID: Rep_2067_c_43_8
Type: TC
Location: 6631 - 8442 (-)
Gene ID: Rep_2067_c_43_9
Type: pfam
Location: 8445 - 9773 (-)
Gene ID: Rep_2067_c_43_10
Type: CAZyme
Location: 10054 - 11376 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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