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Cluster: Rep_2067_CGC29

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_2067_c_11 Rep_2067_c_11_15 18436 19698 - GH88
CAZyme Rep_2067_c_11 Rep_2067_c_11_16 19905 21641 - CBM91 | GH43_11
TF Rep_2067_c_11 Rep_2067_c_11_17 21884 22681 + HTH_AraC | HTH_AraC
TF Rep_2067_c_11 Rep_2067_c_11_18 22726 24294 - HTH_AraC | HTH_AraC
TC Rep_2067_c_11 Rep_2067_c_11_19 24269 26164 - 8.A.59.2.1
TC Rep_2067_c_11 Rep_2067_c_11_20 26274 27113 - 3.A.1.1.45
TC Rep_2067_c_11 Rep_2067_c_11_21 27113 28003 - 3.A.1.1.28
STP Rep_2067_c_11 Rep_2067_c_11_22 28090 29529 - SBP_bac_1
CAZyme Rep_2067_c_11 Rep_2067_c_11_23 29834 31165 + GH28
TC Rep_2067_c_11 Rep_2067_c_11_24 31366 33141 - 3.A.1.111.4
TC Rep_2067_c_11 Rep_2067_c_11_25 33144 34253 - 3.A.1.111.2
Gene ID: Rep_2067_c_11_15
Type: CAZyme
Location: 18436 - 19698 (-)
Gene ID: Rep_2067_c_11_16
Type: CAZyme
Location: 19905 - 21641 (-)
Gene ID: Rep_2067_c_11_17
Type: TF
Location: 21884 - 22681 (+)
Gene ID: Rep_2067_c_11_18
Type: TF
Location: 22726 - 24294 (-)
Gene ID: Rep_2067_c_11_19
Type: TC
Location: 24269 - 26164 (-)
Gene ID: Rep_2067_c_11_20
Type: TC
Location: 26274 - 27113 (-)
Gene ID: Rep_2067_c_11_21
Type: TC
Location: 27113 - 28003 (-)
Gene ID: Rep_2067_c_11_22
Type: STP
Location: 28090 - 29529 (-)
Gene ID: Rep_2067_c_11_23
Type: CAZyme
Location: 29834 - 31165 (+)
Gene ID: Rep_2067_c_11_24
Type: TC
Location: 31366 - 33141 (-)
Gene ID: Rep_2067_c_11_25
Type: TC
Location: 33144 - 34253 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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