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Cluster: Rep_2067_CGC11

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_2067_c_2 Rep_2067_c_2_60 66430 68205 + 2.A.66.1.37
CAZyme Rep_2067_c_2 Rep_2067_c_2_61 68268 69227 - GH159
TF Rep_2067_c_2 Rep_2067_c_2_62 69288 70055 - HTH_AraC
TC Rep_2067_c_2 Rep_2067_c_2_63 70091 71824 - 8.A.59.2.1
TC Rep_2067_c_2 Rep_2067_c_2_64 71888 72802 - 3.A.1.1.29
TC Rep_2067_c_2 Rep_2067_c_2_65 72820 73746 - 3.A.1.1.29
STP Rep_2067_c_2 Rep_2067_c_2_66 73830 75575 - SBP_bac_1
CAZyme Rep_2067_c_2 Rep_2067_c_2_67 75793 78408 - GH95
TF Rep_2067_c_2 Rep_2067_c_2_68 78714 79037 + PadR
NULL(UNKNOWN) Rep_2067_c_2 Rep_2067_c_2_69 79143 80282 + NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_2067_c_2 Rep_2067_c_2_70 80279 81055 + 3.A.1.32.3
Gene ID: Rep_2067_c_2_60
Type: TC
Location: 66430 - 68205 (+)
Gene ID: Rep_2067_c_2_61
Type: CAZyme
Location: 68268 - 69227 (-)
Gene ID: Rep_2067_c_2_62
Type: TF
Location: 69288 - 70055 (-)
Gene ID: Rep_2067_c_2_63
Type: TC
Location: 70091 - 71824 (-)
Gene ID: Rep_2067_c_2_64
Type: TC
Location: 71888 - 72802 (-)
Gene ID: Rep_2067_c_2_65
Type: TC
Location: 72820 - 73746 (-)
Gene ID: Rep_2067_c_2_66
Type: STP
Location: 73830 - 75575 (-)
Gene ID: Rep_2067_c_2_67
Type: CAZyme
Location: 75793 - 78408 (-)
Gene ID: Rep_2067_c_2_68
Type: TF
Location: 78714 - 79037 (+)
Gene ID: Rep_2067_c_2_69
Type:
Location: 79143 - 80282 (+)
Gene ID: Rep_2067_c_2_70
Type: TC
Location: 80279 - 81055 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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