Cluster: Rep_2060_CGC98
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 3
- Substrate:
- Genome ID: Rep_2060
- CGC Family ID: CGCFAM_02061
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_2060_c_74 | Rep_2060_c_74_1 | 350 | 5380 | - | GH136 |
| NULL(UNKNOWN) | Rep_2060_c_74 | Rep_2060_c_74_2 | 5444 | 6550 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_2060_c_74 | Rep_2060_c_74_3 | 6577 | 8574 | - | GH151 |
| TC | Rep_2060_c_74 | Rep_2060_c_74_4 | 8624 | 9454 | - | 3.A.1.1.41 |
| TC | Rep_2060_c_74 | Rep_2060_c_74_5 | 9454 | 10335 | - | 3.A.1.1.11 |
| STP | Rep_2060_c_74 | Rep_2060_c_74_6 | 10464 | 11855 | - | SBP_bac_1 |
| TC | Rep_2060_c_74 | Rep_2060_c_74_7 | 12058 | 13851 | + | 9.B.33.1.1 |
| TF | Rep_2060_c_74 | Rep_2060_c_74_8 | 13829 | 15358 | + | HTH_AraC | HTH_AraC |
| TC | Rep_2060_c_74 | Rep_2060_c_74_9 | 15387 | 16214 | - | 3.A.1.1.7 |
| TC | Rep_2060_c_74 | Rep_2060_c_74_10 | 16230 | 17102 | - | 3.A.1.1.11 |
| TC | Rep_2060_c_74 | Rep_2060_c_74_11 | 17216 | 18655 | - | 3.A.1.1.28 |
| CAZyme | Rep_2060_c_74 | Rep_2060_c_74_12 | 18708 | 23072 | - | GH3 |
| TC | Rep_2060_c_74 | Rep_2060_c_74_13 | 23279 | 25036 | - | 8.A.59.2.1 |
Gene ID: Rep_2060_c_74_1
Type: CAZyme
Location: 350 - 5380 (-)
Type: CAZyme
Location: 350 - 5380 (-)
Gene ID: Rep_2060_c_74_2
Type:
Location: 5444 - 6550 (-)
Type:
Location: 5444 - 6550 (-)
Gene ID: Rep_2060_c_74_3
Type: CAZyme
Location: 6577 - 8574 (-)
Type: CAZyme
Location: 6577 - 8574 (-)
Gene ID: Rep_2060_c_74_4
Type: TC
Location: 8624 - 9454 (-)
Type: TC
Location: 8624 - 9454 (-)
Gene ID: Rep_2060_c_74_5
Type: TC
Location: 9454 - 10335 (-)
Type: TC
Location: 9454 - 10335 (-)
Gene ID: Rep_2060_c_74_6
Type: STP
Location: 10464 - 11855 (-)
Type: STP
Location: 10464 - 11855 (-)
Gene ID: Rep_2060_c_74_7
Type: TC
Location: 12058 - 13851 (+)
Type: TC
Location: 12058 - 13851 (+)
Gene ID: Rep_2060_c_74_8
Type: TF
Location: 13829 - 15358 (+)
Type: TF
Location: 13829 - 15358 (+)
Gene ID: Rep_2060_c_74_9
Type: TC
Location: 15387 - 16214 (-)
Type: TC
Location: 15387 - 16214 (-)
Gene ID: Rep_2060_c_74_10
Type: TC
Location: 16230 - 17102 (-)
Type: TC
Location: 16230 - 17102 (-)
Gene ID: Rep_2060_c_74_11
Type: TC
Location: 17216 - 18655 (-)
Type: TC
Location: 17216 - 18655 (-)
Gene ID: Rep_2060_c_74_12
Type: CAZyme
Location: 18708 - 23072 (-)
Type: CAZyme
Location: 18708 - 23072 (-)
Gene ID: Rep_2060_c_74_13
Type: TC
Location: 23279 - 25036 (-)
Type: TC
Location: 23279 - 25036 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Robinsoniella
Species
Robinsoniella sp900539655
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.