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Cluster: Rep_2060_CGC93

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_2060_c_63 Rep_2060_c_63_17 21393 24680 - GH106
TF Rep_2060_c_63 Rep_2060_c_63_18 24670 26214 - HTH_AraC
TC Rep_2060_c_63 Rep_2060_c_63_19 26214 28136 - 8.A.59.2.1
TC Rep_2060_c_63 Rep_2060_c_63_20 28185 29018 - 3.A.1.1.28
TC Rep_2060_c_63 Rep_2060_c_63_21 29018 29893 - 3.A.1.1.28
TC Rep_2060_c_63 Rep_2060_c_63_22 30009 31409 - 3.A.1.1.42
STP Rep_2060_c_63 Rep_2060_c_63_23 31828 32448 + TetR_N
TC Rep_2060_c_63 Rep_2060_c_63_24 32445 33323 + 3.A.1.126.1
Gene ID: Rep_2060_c_63_17
Type: CAZyme
Location: 21393 - 24680 (-)
Gene ID: Rep_2060_c_63_18
Type: TF
Location: 24670 - 26214 (-)
Gene ID: Rep_2060_c_63_19
Type: TC
Location: 26214 - 28136 (-)
Gene ID: Rep_2060_c_63_20
Type: TC
Location: 28185 - 29018 (-)
Gene ID: Rep_2060_c_63_21
Type: TC
Location: 29018 - 29893 (-)
Gene ID: Rep_2060_c_63_22
Type: TC
Location: 30009 - 31409 (-)
Gene ID: Rep_2060_c_63_23
Type: STP
Location: 31828 - 32448 (+)
Gene ID: Rep_2060_c_63_24
Type: TC
Location: 32445 - 33323 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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