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Cluster: Rep_2060_CGC92

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_2060_c_63 Rep_2060_c_63_1 2 574 - 3.A.1.1.42
STP Rep_2060_c_63 Rep_2060_c_63_2 705 2084 - SBP_bac_1
CAZyme Rep_2060_c_63 Rep_2060_c_63_3 2326 3420 - GH172
TC Rep_2060_c_63 Rep_2060_c_63_4 3565 4389 - 3.A.1.1.39
TC Rep_2060_c_63 Rep_2060_c_63_5 4428 5369 - 3.A.1.1.20
STP Rep_2060_c_63 Rep_2060_c_63_6 5457 6806 - SBP_bac_1
TF Rep_2060_c_63 Rep_2060_c_63_7 7036 8541 - HTH_AraC
TC Rep_2060_c_63 Rep_2060_c_63_8 8609 10363 - 9.B.33.1.1
TC Rep_2060_c_63 Rep_2060_c_63_9 10629 12419 - 9.B.33.1.1
TC Rep_2060_c_63 Rep_2060_c_63_10 12443 13270 - 3.A.1.1.42
TC Rep_2060_c_63 Rep_2060_c_63_11 13270 14127 - 3.A.1.1.42
STP Rep_2060_c_63 Rep_2060_c_63_12 14194 15579 - SBP_bac_1
CAZyme Rep_2060_c_63 Rep_2060_c_63_13 15684 17765 - GH78
Gene ID: Rep_2060_c_63_1
Type: TC
Location: 2 - 574 (-)
Gene ID: Rep_2060_c_63_2
Type: STP
Location: 705 - 2084 (-)
Gene ID: Rep_2060_c_63_3
Type: CAZyme
Location: 2326 - 3420 (-)
Gene ID: Rep_2060_c_63_4
Type: TC
Location: 3565 - 4389 (-)
Gene ID: Rep_2060_c_63_5
Type: TC
Location: 4428 - 5369 (-)
Gene ID: Rep_2060_c_63_6
Type: STP
Location: 5457 - 6806 (-)
Gene ID: Rep_2060_c_63_7
Type: TF
Location: 7036 - 8541 (-)
Gene ID: Rep_2060_c_63_8
Type: TC
Location: 8609 - 10363 (-)
Gene ID: Rep_2060_c_63_9
Type: TC
Location: 10629 - 12419 (-)
Gene ID: Rep_2060_c_63_10
Type: TC
Location: 12443 - 13270 (-)
Gene ID: Rep_2060_c_63_11
Type: TC
Location: 13270 - 14127 (-)
Gene ID: Rep_2060_c_63_12
Type: STP
Location: 14194 - 15579 (-)
Gene ID: Rep_2060_c_63_13
Type: CAZyme
Location: 15684 - 17765 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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