Cluster: Rep_2060_CGC89
🧬 Cluster Details
- Gene Count: 17
- CAZyme Count: 3
- Substrate:
- Genome ID: Rep_2060
- CGC Family ID: CGCFAM_02636
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_2060_c_60 | Rep_2060_c_60_1 | 185 | 709 | - | 9.B.156.3.1 |
| STP | Rep_2060_c_60 | Rep_2060_c_60_2 | 797 | 2098 | - | GGDEF |
| TC | Rep_2060_c_60 | Rep_2060_c_60_3 | 2239 | 3084 | - | 3.A.1.1.18 |
| TC | Rep_2060_c_60 | Rep_2060_c_60_4 | 3086 | 4006 | - | 3.A.1.1.4 |
| STP | Rep_2060_c_60 | Rep_2060_c_60_5 | 4120 | 5550 | - | SBP_bac_1 |
| CAZyme | Rep_2060_c_60 | Rep_2060_c_60_6 | 5757 | 13715 | - | CBM32 | CBM57 | GH136 |
| NULL(UNKNOWN) | Rep_2060_c_60 | Rep_2060_c_60_7 | 13764 | 14507 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TF | Rep_2060_c_60 | Rep_2060_c_60_8 | 14770 | 16332 | - | HTH_AraC | HTH_AraC |
| TC | Rep_2060_c_60 | Rep_2060_c_60_9 | 16408 | 18165 | - | 8.A.59.2.1 |
| CAZyme | Rep_2060_c_60 | Rep_2060_c_60_10 | 18410 | 24964 | - | CBM66 | CBM66 | GH2 |
| TC | Rep_2060_c_60 | Rep_2060_c_60_11 | 25131 | 27029 | - | 3.A.1.135.5 |
| TC | Rep_2060_c_60 | Rep_2060_c_60_12 | 27007 | 28773 | - | 3.A.1.135.5 |
| TF | Rep_2060_c_60 | Rep_2060_c_60_13 | 28949 | 29386 | - | MarR |
| CAZyme | Rep_2060_c_60 | Rep_2060_c_60_14 | 29579 | 36115 | - | CBM35 | CBM35 | CBM6 | GH31 |
| TC | Rep_2060_c_60 | Rep_2060_c_60_15 | 36293 | 37489 | - | 3.A.1.2.5 |
| TC | Rep_2060_c_60 | Rep_2060_c_60_16 | 37502 | 39034 | - | 3.A.1.2.5 |
| TC | Rep_2060_c_60 | Rep_2060_c_60_17 | 39132 | 40358 | - | 3.A.1.2.22 |
Gene ID: Rep_2060_c_60_1
Type: TC
Location: 185 - 709 (-)
Type: TC
Location: 185 - 709 (-)
Gene ID: Rep_2060_c_60_2
Type: STP
Location: 797 - 2098 (-)
Type: STP
Location: 797 - 2098 (-)
Gene ID: Rep_2060_c_60_3
Type: TC
Location: 2239 - 3084 (-)
Type: TC
Location: 2239 - 3084 (-)
Gene ID: Rep_2060_c_60_4
Type: TC
Location: 3086 - 4006 (-)
Type: TC
Location: 3086 - 4006 (-)
Gene ID: Rep_2060_c_60_5
Type: STP
Location: 4120 - 5550 (-)
Type: STP
Location: 4120 - 5550 (-)
Gene ID: Rep_2060_c_60_6
Type: CAZyme
Location: 5757 - 13715 (-)
Type: CAZyme
Location: 5757 - 13715 (-)
Gene ID: Rep_2060_c_60_7
Type:
Location: 13764 - 14507 (-)
Type:
Location: 13764 - 14507 (-)
Gene ID: Rep_2060_c_60_8
Type: TF
Location: 14770 - 16332 (-)
Type: TF
Location: 14770 - 16332 (-)
Gene ID: Rep_2060_c_60_9
Type: TC
Location: 16408 - 18165 (-)
Type: TC
Location: 16408 - 18165 (-)
Gene ID: Rep_2060_c_60_10
Type: CAZyme
Location: 18410 - 24964 (-)
Type: CAZyme
Location: 18410 - 24964 (-)
Gene ID: Rep_2060_c_60_11
Type: TC
Location: 25131 - 27029 (-)
Type: TC
Location: 25131 - 27029 (-)
Gene ID: Rep_2060_c_60_12
Type: TC
Location: 27007 - 28773 (-)
Type: TC
Location: 27007 - 28773 (-)
Gene ID: Rep_2060_c_60_13
Type: TF
Location: 28949 - 29386 (-)
Type: TF
Location: 28949 - 29386 (-)
Gene ID: Rep_2060_c_60_14
Type: CAZyme
Location: 29579 - 36115 (-)
Type: CAZyme
Location: 29579 - 36115 (-)
Gene ID: Rep_2060_c_60_15
Type: TC
Location: 36293 - 37489 (-)
Type: TC
Location: 36293 - 37489 (-)
Gene ID: Rep_2060_c_60_16
Type: TC
Location: 37502 - 39034 (-)
Type: TC
Location: 37502 - 39034 (-)
Gene ID: Rep_2060_c_60_17
Type: TC
Location: 39132 - 40358 (-)
Type: TC
Location: 39132 - 40358 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Robinsoniella
Species
Robinsoniella sp900539655
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.