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Cluster: Rep_2060_CGC84

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_2060_c_55 Rep_2060_c_55_11 13923 14813 + 3.A.1.1.7
TC Rep_2060_c_55 Rep_2060_c_55_12 14810 15655 + 3.A.1.1.47
TF Rep_2060_c_55 Rep_2060_c_55_13 15771 17234 - 0036286
TC Rep_2060_c_55 Rep_2060_c_55_14 17255 18997 - 8.A.59.2.1
TC Rep_2060_c_55 Rep_2060_c_55_15 19247 20644 + 3.A.1.1.21
TC Rep_2060_c_55 Rep_2060_c_55_16 20741 21613 + 3.A.1.1.7
TC Rep_2060_c_55 Rep_2060_c_55_17 21613 22440 + 3.A.1.1.31
CAZyme Rep_2060_c_55 Rep_2060_c_55_18 22455 29339 + CBM51
CAZyme Rep_2060_c_55 Rep_2060_c_55_19 29443 36039 + CBM51 | CBM51
TF Rep_2060_c_55 Rep_2060_c_55_20 36140 37714 - HTH_AraC | HTH_AraC
TC Rep_2060_c_55 Rep_2060_c_55_21 37711 39510 - 8.A.59.2.1
TC Rep_2060_c_55 Rep_2060_c_55_22 39720 41093 + 3.A.1.1.40
TC Rep_2060_c_55 Rep_2060_c_55_23 41136 42032 + 3.A.1.1.20
TC Rep_2060_c_55 Rep_2060_c_55_24 42044 42865 + 3.A.1.1.34
CAZyme Rep_2060_c_55 Rep_2060_c_55_25 42876 43982 + GH172
Gene ID: Rep_2060_c_55_11
Type: TC
Location: 13923 - 14813 (+)
Gene ID: Rep_2060_c_55_12
Type: TC
Location: 14810 - 15655 (+)
Gene ID: Rep_2060_c_55_13
Type: TF
Location: 15771 - 17234 (-)
Gene ID: Rep_2060_c_55_14
Type: TC
Location: 17255 - 18997 (-)
Gene ID: Rep_2060_c_55_15
Type: TC
Location: 19247 - 20644 (+)
Gene ID: Rep_2060_c_55_16
Type: TC
Location: 20741 - 21613 (+)
Gene ID: Rep_2060_c_55_17
Type: TC
Location: 21613 - 22440 (+)
Gene ID: Rep_2060_c_55_18
Type: CAZyme
Location: 22455 - 29339 (+)
Gene ID: Rep_2060_c_55_19
Type: CAZyme
Location: 29443 - 36039 (+)
Gene ID: Rep_2060_c_55_20
Type: TF
Location: 36140 - 37714 (-)
Gene ID: Rep_2060_c_55_21
Type: TC
Location: 37711 - 39510 (-)
Gene ID: Rep_2060_c_55_22
Type: TC
Location: 39720 - 41093 (+)
Gene ID: Rep_2060_c_55_23
Type: TC
Location: 41136 - 42032 (+)
Gene ID: Rep_2060_c_55_24
Type: TC
Location: 42044 - 42865 (+)
Gene ID: Rep_2060_c_55_25
Type: CAZyme
Location: 42876 - 43982 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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