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Cluster: Rep_2060_CGC78

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_2060_c_46 Rep_2060_c_46_30 30220 31998 - 2.A.66.1.32
NULL(UNKNOWN) Rep_2060_c_46 Rep_2060_c_46_31 32267 35137 - NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_2060_c_46 Rep_2060_c_46_32 35134 36006 - 3.A.1.1.46
TC Rep_2060_c_46 Rep_2060_c_46_33 36020 36907 - 3.A.1.1.11
TC Rep_2060_c_46 Rep_2060_c_46_34 36999 38609 - 3.A.1.1.3
TF Rep_2060_c_46 Rep_2060_c_46_35 38722 39786 + HTH_AraC | HTH_AraC
STP Rep_2060_c_46 Rep_2060_c_46_36 39806 41593 + dCache_1
CAZyme Rep_2060_c_46 Rep_2060_c_46_37 41701 43731 - GH42
Gene ID: Rep_2060_c_46_30
Type: TC
Location: 30220 - 31998 (-)
Gene ID: Rep_2060_c_46_31
Type:
Location: 32267 - 35137 (-)
Gene ID: Rep_2060_c_46_32
Type: TC
Location: 35134 - 36006 (-)
Gene ID: Rep_2060_c_46_33
Type: TC
Location: 36020 - 36907 (-)
Gene ID: Rep_2060_c_46_34
Type: TC
Location: 36999 - 38609 (-)
Gene ID: Rep_2060_c_46_35
Type: TF
Location: 38722 - 39786 (+)
Gene ID: Rep_2060_c_46_36
Type: STP
Location: 39806 - 41593 (+)
Gene ID: Rep_2060_c_46_37
Type: CAZyme
Location: 41701 - 43731 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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