dbCAN Logo

Cluster: Rep_2060_CGC75

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_2060_c_43 Rep_2060_c_43_1 398 1750 - GH29
TC Rep_2060_c_43 Rep_2060_c_43_2 1771 3555 - 8.A.59.2.1
TF Rep_2060_c_43 Rep_2060_c_43_3 3545 4645 - HTH_AraC
TC Rep_2060_c_43 Rep_2060_c_43_4 4965 5918 + 3.A.1.1.10
TC Rep_2060_c_43 Rep_2060_c_43_5 5933 6871 + 3.A.1.1.29
STP Rep_2060_c_43 Rep_2060_c_43_6 6909 8507 + SBP_bac_1
sulfatase Rep_2060_c_43 Rep_2060_c_43_7 8509 9984 + S1_26
CAZyme Rep_2060_c_43 Rep_2060_c_43_8 10093 15483 + GH111
TC Rep_2060_c_43 Rep_2060_c_43_9 15697 17103 + 3.A.1.1.21
TC Rep_2060_c_43 Rep_2060_c_43_10 17230 18108 + 3.A.1.1.7
TC Rep_2060_c_43 Rep_2060_c_43_11 18120 18965 + 3.A.1.1.18
Gene ID: Rep_2060_c_43_1
Type: CAZyme
Location: 398 - 1750 (-)
Gene ID: Rep_2060_c_43_2
Type: TC
Location: 1771 - 3555 (-)
Gene ID: Rep_2060_c_43_3
Type: TF
Location: 3545 - 4645 (-)
Gene ID: Rep_2060_c_43_4
Type: TC
Location: 4965 - 5918 (+)
Gene ID: Rep_2060_c_43_5
Type: TC
Location: 5933 - 6871 (+)
Gene ID: Rep_2060_c_43_6
Type: STP
Location: 6909 - 8507 (+)
Gene ID: Rep_2060_c_43_7
Type: sulfatase
Location: 8509 - 9984 (+)
Gene ID: Rep_2060_c_43_8
Type: CAZyme
Location: 10093 - 15483 (+)
Gene ID: Rep_2060_c_43_9
Type: TC
Location: 15697 - 17103 (+)
Gene ID: Rep_2060_c_43_10
Type: TC
Location: 17230 - 18108 (+)
Gene ID: Rep_2060_c_43_11
Type: TC
Location: 18120 - 18965 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

← Back to Cluster List