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Cluster: Rep_2060_CGC71

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_2060_c_41 Rep_2060_c_41_19 19594 20994 + 3.A.1.1.16
TC Rep_2060_c_41 Rep_2060_c_41_20 21187 22158 + 3.A.1.1.20
TC Rep_2060_c_41 Rep_2060_c_41_21 22151 22978 + 3.A.1.1.36
CAZyme Rep_2060_c_41 Rep_2060_c_41_22 23070 24653 + GH51_1
TF Rep_2060_c_41 Rep_2060_c_41_23 24682 25671 + LacI
CAZyme Rep_2060_c_41 Rep_2060_c_41_24 25702 26652 + GH43_26
pfam Rep_2060_c_41 Rep_2060_c_41_25 26720 27418 - Pirin | Cupin_2 | Pirin_C_2
TF Rep_2060_c_41 Rep_2060_c_41_26 27754 28236 + MarR
TC Rep_2060_c_41 Rep_2060_c_41_27 28220 30373 + 3.A.1.135.6
TC Rep_2060_c_41 Rep_2060_c_41_28 30370 32223 + 3.A.1.135.6
TC Rep_2060_c_41 Rep_2060_c_41_29 32240 32836 + 2.A.115.2.14
Gene ID: Rep_2060_c_41_19
Type: TC
Location: 19594 - 20994 (+)
Gene ID: Rep_2060_c_41_20
Type: TC
Location: 21187 - 22158 (+)
Gene ID: Rep_2060_c_41_21
Type: TC
Location: 22151 - 22978 (+)
Gene ID: Rep_2060_c_41_22
Type: CAZyme
Location: 23070 - 24653 (+)
Gene ID: Rep_2060_c_41_23
Type: TF
Location: 24682 - 25671 (+)
Gene ID: Rep_2060_c_41_24
Type: CAZyme
Location: 25702 - 26652 (+)
Gene ID: Rep_2060_c_41_25
Type: pfam
Location: 26720 - 27418 (-)
Gene ID: Rep_2060_c_41_26
Type: TF
Location: 27754 - 28236 (+)
Gene ID: Rep_2060_c_41_27
Type: TC
Location: 28220 - 30373 (+)
Gene ID: Rep_2060_c_41_28
Type: TC
Location: 30370 - 32223 (+)
Gene ID: Rep_2060_c_41_29
Type: TC
Location: 32240 - 32836 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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