dbCAN Logo

Cluster: Rep_2060_CGC67

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_2060_c_37 Rep_2060_c_37_11 13333 16035 - GH106
TF Rep_2060_c_37 Rep_2060_c_37_12 16079 17629 - HTH_AraC | HTH_AraC
TC Rep_2060_c_37 Rep_2060_c_37_13 17646 19439 - 8.A.59.2.1
STP Rep_2060_c_37 Rep_2060_c_37_14 19671 21290 - SBP_bac_1
TC Rep_2060_c_37 Rep_2060_c_37_15 21507 22400 - 3.A.1.1.10
TC Rep_2060_c_37 Rep_2060_c_37_16 22400 23341 - 3.A.1.1.10
NULL(UNKNOWN) Rep_2060_c_37 Rep_2060_c_37_17 23583 25157 - NULL(UNKNOWN)
[View Structural Homologs]
pfam Rep_2060_c_37 Rep_2060_c_37_18 25212 26075 - AP_endonuc_2
CAZyme Rep_2060_c_37 Rep_2060_c_37_19 26089 28329 - GH2
CAZyme Rep_2060_c_37 Rep_2060_c_37_20 28345 30876 - CBM67 | GH78
pfam Rep_2060_c_37 Rep_2060_c_37_21 30900 32375 - MFS_2
CAZyme Rep_2060_c_37 Rep_2060_c_37_22 32401 33717 - GH1
Gene ID: Rep_2060_c_37_11
Type: CAZyme
Location: 13333 - 16035 (-)
Gene ID: Rep_2060_c_37_12
Type: TF
Location: 16079 - 17629 (-)
Gene ID: Rep_2060_c_37_13
Type: TC
Location: 17646 - 19439 (-)
Gene ID: Rep_2060_c_37_14
Type: STP
Location: 19671 - 21290 (-)
Gene ID: Rep_2060_c_37_15
Type: TC
Location: 21507 - 22400 (-)
Gene ID: Rep_2060_c_37_16
Type: TC
Location: 22400 - 23341 (-)
Gene ID: Rep_2060_c_37_17
Type:
Location: 23583 - 25157 (-)
Gene ID: Rep_2060_c_37_18
Type: pfam
Location: 25212 - 26075 (-)
Gene ID: Rep_2060_c_37_19
Type: CAZyme
Location: 26089 - 28329 (-)
Gene ID: Rep_2060_c_37_20
Type: CAZyme
Location: 28345 - 30876 (-)
Gene ID: Rep_2060_c_37_21
Type: pfam
Location: 30900 - 32375 (-)
Gene ID: Rep_2060_c_37_22
Type: CAZyme
Location: 32401 - 33717 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

← Back to Cluster List