Cluster: Rep_2060_CGC62
🧬 Cluster Details
- Gene Count: 17
- CAZyme Count: 4
- Substrate:
- Genome ID: Rep_2060
- CGC Family ID: CGCFAM_02642
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_2060_c_34 | Rep_2060_c_34_1 | 1218 | 7871 | + | CBM32 | CBM67 | CBM67 | GH78 |
| CAZyme | Rep_2060_c_34 | Rep_2060_c_34_2 | 7893 | 13550 | + | CBM67 | GH78 |
| CAZyme | Rep_2060_c_34 | Rep_2060_c_34_3 | 13704 | 19934 | + | CBM67 | GH78 |
| CAZyme | Rep_2060_c_34 | Rep_2060_c_34_4 | 20031 | 27065 | + | CBM67 | GH78 |
| peptidase | Rep_2060_c_34 | Rep_2060_c_34_5 | 27186 | 28985 | + | C40.UPW |
| TC | Rep_2060_c_34 | Rep_2060_c_34_6 | 29209 | 31047 | - | 8.A.59.2.1 |
| TF | Rep_2060_c_34 | Rep_2060_c_34_7 | 31044 | 32594 | - | HTH_AraC | HTH_AraC |
| TF | Rep_2060_c_34 | Rep_2060_c_34_8 | 32677 | 34128 | - | HTH_AraC |
| TC | Rep_2060_c_34 | Rep_2060_c_34_9 | 34589 | 36091 | + | 3.A.1.2.20 |
| TC | Rep_2060_c_34 | Rep_2060_c_34_10 | 36113 | 37114 | + | 3.A.1.2.9 |
| TC | Rep_2060_c_34 | Rep_2060_c_34_11 | 37117 | 38130 | + | 3.A.1.2.1 |
| TC | Rep_2060_c_34 | Rep_2060_c_34_12 | 38210 | 39391 | + | 3.A.1.2.9 |
| pfam | Rep_2060_c_34 | Rep_2060_c_34_13 | 39619 | 39930 | + | rhaM |
| pfam | Rep_2060_c_34 | Rep_2060_c_34_14 | 40139 | 41350 | - | Peripla_BP_4 |
| TC | Rep_2060_c_34 | Rep_2060_c_34_15 | 41531 | 42796 | - | 3.A.1.2.8 |
| TC | Rep_2060_c_34 | Rep_2060_c_34_16 | 42796 | 43800 | - | 3.A.1.2.9 |
| TC | Rep_2060_c_34 | Rep_2060_c_34_17 | 43804 | 45312 | - | 3.A.1.2.20 |
Gene ID: Rep_2060_c_34_1
Type: CAZyme
Location: 1218 - 7871 (+)
Type: CAZyme
Location: 1218 - 7871 (+)
Gene ID: Rep_2060_c_34_2
Type: CAZyme
Location: 7893 - 13550 (+)
Type: CAZyme
Location: 7893 - 13550 (+)
Gene ID: Rep_2060_c_34_3
Type: CAZyme
Location: 13704 - 19934 (+)
Type: CAZyme
Location: 13704 - 19934 (+)
Gene ID: Rep_2060_c_34_4
Type: CAZyme
Location: 20031 - 27065 (+)
Type: CAZyme
Location: 20031 - 27065 (+)
Gene ID: Rep_2060_c_34_5
Type: peptidase
Location: 27186 - 28985 (+)
Type: peptidase
Location: 27186 - 28985 (+)
Gene ID: Rep_2060_c_34_6
Type: TC
Location: 29209 - 31047 (-)
Type: TC
Location: 29209 - 31047 (-)
Gene ID: Rep_2060_c_34_7
Type: TF
Location: 31044 - 32594 (-)
Type: TF
Location: 31044 - 32594 (-)
Gene ID: Rep_2060_c_34_8
Type: TF
Location: 32677 - 34128 (-)
Type: TF
Location: 32677 - 34128 (-)
Gene ID: Rep_2060_c_34_9
Type: TC
Location: 34589 - 36091 (+)
Type: TC
Location: 34589 - 36091 (+)
Gene ID: Rep_2060_c_34_10
Type: TC
Location: 36113 - 37114 (+)
Type: TC
Location: 36113 - 37114 (+)
Gene ID: Rep_2060_c_34_11
Type: TC
Location: 37117 - 38130 (+)
Type: TC
Location: 37117 - 38130 (+)
Gene ID: Rep_2060_c_34_12
Type: TC
Location: 38210 - 39391 (+)
Type: TC
Location: 38210 - 39391 (+)
Gene ID: Rep_2060_c_34_13
Type: pfam
Location: 39619 - 39930 (+)
Type: pfam
Location: 39619 - 39930 (+)
Gene ID: Rep_2060_c_34_14
Type: pfam
Location: 40139 - 41350 (-)
Type: pfam
Location: 40139 - 41350 (-)
Gene ID: Rep_2060_c_34_15
Type: TC
Location: 41531 - 42796 (-)
Type: TC
Location: 41531 - 42796 (-)
Gene ID: Rep_2060_c_34_16
Type: TC
Location: 42796 - 43800 (-)
Type: TC
Location: 42796 - 43800 (-)
Gene ID: Rep_2060_c_34_17
Type: TC
Location: 43804 - 45312 (-)
Type: TC
Location: 43804 - 45312 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Robinsoniella
Species
Robinsoniella sp900539655
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.