Cluster: Rep_2060_CGC61
🧬 Cluster Details
- Gene Count: 15
- CAZyme Count: 5
- Substrate:
- Genome ID: Rep_2060
- CGC Family ID: CGCFAM_03476
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_2060_c_33 | Rep_2060_c_33_22 | 24962 | 27565 | - | GH106 |
| CAZyme | Rep_2060_c_33 | Rep_2060_c_33_23 | 27597 | 29621 | - | GH42 |
| TF | Rep_2060_c_33 | Rep_2060_c_33_24 | 29623 | 31197 | - | HTH_AraC |
| TC | Rep_2060_c_33 | Rep_2060_c_33_25 | 31233 | 33029 | - | 8.A.59.2.1 |
| TC | Rep_2060_c_33 | Rep_2060_c_33_26 | 33054 | 33875 | - | 3.A.1.1.24 |
| TC | Rep_2060_c_33 | Rep_2060_c_33_27 | 33875 | 34747 | - | 3.A.1.1.7 |
| STP | Rep_2060_c_33 | Rep_2060_c_33_28 | 34848 | 36248 | - | SBP_bac_1 |
| CAZyme | Rep_2060_c_33 | Rep_2060_c_33_29 | 36415 | 39066 | - | GH78 |
| CAZyme | Rep_2060_c_33 | Rep_2060_c_33_30 | 39429 | 41714 | - | GH3 |
| TF | Rep_2060_c_33 | Rep_2060_c_33_31 | 41807 | 43393 | - | HTH_AraC | HTH_AraC |
| TC | Rep_2060_c_33 | Rep_2060_c_33_32 | 43393 | 45231 | - | 9.B.33.1.1 |
| TC | Rep_2060_c_33 | Rep_2060_c_33_33 | 45253 | 46200 | - | 3.A.1.1.29 |
| TC | Rep_2060_c_33 | Rep_2060_c_33_34 | 46315 | 47238 | - | 3.A.1.1.10 |
| pfam | Rep_2060_c_33 | Rep_2060_c_33_35 | 47341 | 48867 | - | DUF3502 |
| CAZyme | Rep_2060_c_33 | Rep_2060_c_33_36 | 49133 | 54217 | - | CBM66 | GH127 |
Gene ID: Rep_2060_c_33_22
Type: CAZyme
Location: 24962 - 27565 (-)
Type: CAZyme
Location: 24962 - 27565 (-)
Gene ID: Rep_2060_c_33_23
Type: CAZyme
Location: 27597 - 29621 (-)
Type: CAZyme
Location: 27597 - 29621 (-)
Gene ID: Rep_2060_c_33_24
Type: TF
Location: 29623 - 31197 (-)
Type: TF
Location: 29623 - 31197 (-)
Gene ID: Rep_2060_c_33_25
Type: TC
Location: 31233 - 33029 (-)
Type: TC
Location: 31233 - 33029 (-)
Gene ID: Rep_2060_c_33_26
Type: TC
Location: 33054 - 33875 (-)
Type: TC
Location: 33054 - 33875 (-)
Gene ID: Rep_2060_c_33_27
Type: TC
Location: 33875 - 34747 (-)
Type: TC
Location: 33875 - 34747 (-)
Gene ID: Rep_2060_c_33_28
Type: STP
Location: 34848 - 36248 (-)
Type: STP
Location: 34848 - 36248 (-)
Gene ID: Rep_2060_c_33_29
Type: CAZyme
Location: 36415 - 39066 (-)
Type: CAZyme
Location: 36415 - 39066 (-)
Gene ID: Rep_2060_c_33_30
Type: CAZyme
Location: 39429 - 41714 (-)
Type: CAZyme
Location: 39429 - 41714 (-)
Gene ID: Rep_2060_c_33_31
Type: TF
Location: 41807 - 43393 (-)
Type: TF
Location: 41807 - 43393 (-)
Gene ID: Rep_2060_c_33_32
Type: TC
Location: 43393 - 45231 (-)
Type: TC
Location: 43393 - 45231 (-)
Gene ID: Rep_2060_c_33_33
Type: TC
Location: 45253 - 46200 (-)
Type: TC
Location: 45253 - 46200 (-)
Gene ID: Rep_2060_c_33_34
Type: TC
Location: 46315 - 47238 (-)
Type: TC
Location: 46315 - 47238 (-)
Gene ID: Rep_2060_c_33_35
Type: pfam
Location: 47341 - 48867 (-)
Type: pfam
Location: 47341 - 48867 (-)
Gene ID: Rep_2060_c_33_36
Type: CAZyme
Location: 49133 - 54217 (-)
Type: CAZyme
Location: 49133 - 54217 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Robinsoniella
Species
Robinsoniella sp900539655
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.