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Cluster: Rep_2060_CGC59

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_2060_c_31 Rep_2060_c_31_4 3324 4202 + 2.A.115.1.2
pfam Rep_2060_c_31 Rep_2060_c_31_5 4351 5439 + HTH_30 | GGDEF_2
TC Rep_2060_c_31 Rep_2060_c_31_6 5740 6996 + 9.B.174.1.2
STP Rep_2060_c_31 Rep_2060_c_31_7 7018 7872 + Sigma70_r3
CAZyme Rep_2060_c_31 Rep_2060_c_31_8 8012 14740 + CBM71 | GH2
TC Rep_2060_c_31 Rep_2060_c_31_9 14837 16156 - 9.A.40.2.4
NULL(UNKNOWN) Rep_2060_c_31 Rep_2060_c_31_10 16380 18359 + NULL(UNKNOWN)
[View Structural Homologs]
pfam Rep_2060_c_31 Rep_2060_c_31_11 18526 18900 + DUF3792
TC Rep_2060_c_31 Rep_2060_c_31_12 19115 20884 + 3.A.6.3.1
Gene ID: Rep_2060_c_31_4
Type: TC
Location: 3324 - 4202 (+)
Gene ID: Rep_2060_c_31_5
Type: pfam
Location: 4351 - 5439 (+)
Gene ID: Rep_2060_c_31_6
Type: TC
Location: 5740 - 6996 (+)
Gene ID: Rep_2060_c_31_7
Type: STP
Location: 7018 - 7872 (+)
Gene ID: Rep_2060_c_31_8
Type: CAZyme
Location: 8012 - 14740 (+)
Gene ID: Rep_2060_c_31_9
Type: TC
Location: 14837 - 16156 (-)
Gene ID: Rep_2060_c_31_10
Type:
Location: 16380 - 18359 (+)
Gene ID: Rep_2060_c_31_11
Type: pfam
Location: 18526 - 18900 (+)
Gene ID: Rep_2060_c_31_12
Type: TC
Location: 19115 - 20884 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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