Cluster: Rep_2060_CGC56
🧬 Cluster Details
- Gene Count: 16
- CAZyme Count: 3
- Substrate:
- Genome ID: Rep_2060
- CGC Family ID: CGCFAM_07588
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_2060_c_28 | Rep_2060_c_28_4 | 2162 | 9463 | - | GH136 | GH20 |
| TC | Rep_2060_c_28 | Rep_2060_c_28_5 | 9908 | 12109 | - | 2.A.6.4.2 |
| NULL(UNKNOWN) | Rep_2060_c_28 | Rep_2060_c_28_6 | 12172 | 12603 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | Rep_2060_c_28 | Rep_2060_c_28_7 | 12843 | 13289 | + | Cupin_1 | Cupin_2 |
| CAZyme | Rep_2060_c_28 | Rep_2060_c_28_8 | 13353 | 15293 | - | GH127 |
| TC | Rep_2060_c_28 | Rep_2060_c_28_9 | 15504 | 16337 | - | 3.A.1.1.41 |
| TC | Rep_2060_c_28 | Rep_2060_c_28_10 | 16339 | 17244 | - | 3.A.1.1.25 |
| STP | Rep_2060_c_28 | Rep_2060_c_28_11 | 17336 | 18697 | - | SBP_bac_1 |
| TC | Rep_2060_c_28 | Rep_2060_c_28_12 | 18877 | 20043 | - | 3.A.1.1.2 |
| TF | Rep_2060_c_28 | Rep_2060_c_28_13 | 20084 | 21595 | - | HTH_AraC |
| TC | Rep_2060_c_28 | Rep_2060_c_28_14 | 21576 | 23417 | - | 8.A.59.2.1 |
| CAZyme | Rep_2060_c_28 | Rep_2060_c_28_15 | 23578 | 30588 | - | GH121 |
| pfam | Rep_2060_c_28 | Rep_2060_c_28_16 | 31125 | 31391 | - | Ribosomal_S18 |
| TC | Rep_2060_c_28 | Rep_2060_c_28_17 | 31458 | 31910 | - | 3.A.7.19.1 |
| pfam | Rep_2060_c_28 | Rep_2060_c_28_18 | 31930 | 32217 | - | Ribosomal_S6 |
| TC | Rep_2060_c_28 | Rep_2060_c_28_19 | 32454 | 32822 | - | 9.B.143.3.6 |
Gene ID: Rep_2060_c_28_4
Type: CAZyme
Location: 2162 - 9463 (-)
Type: CAZyme
Location: 2162 - 9463 (-)
Gene ID: Rep_2060_c_28_5
Type: TC
Location: 9908 - 12109 (-)
Type: TC
Location: 9908 - 12109 (-)
Gene ID: Rep_2060_c_28_6
Type:
Location: 12172 - 12603 (-)
Type:
Location: 12172 - 12603 (-)
Gene ID: Rep_2060_c_28_7
Type: pfam
Location: 12843 - 13289 (+)
Type: pfam
Location: 12843 - 13289 (+)
Gene ID: Rep_2060_c_28_8
Type: CAZyme
Location: 13353 - 15293 (-)
Type: CAZyme
Location: 13353 - 15293 (-)
Gene ID: Rep_2060_c_28_9
Type: TC
Location: 15504 - 16337 (-)
Type: TC
Location: 15504 - 16337 (-)
Gene ID: Rep_2060_c_28_10
Type: TC
Location: 16339 - 17244 (-)
Type: TC
Location: 16339 - 17244 (-)
Gene ID: Rep_2060_c_28_11
Type: STP
Location: 17336 - 18697 (-)
Type: STP
Location: 17336 - 18697 (-)
Gene ID: Rep_2060_c_28_12
Type: TC
Location: 18877 - 20043 (-)
Type: TC
Location: 18877 - 20043 (-)
Gene ID: Rep_2060_c_28_13
Type: TF
Location: 20084 - 21595 (-)
Type: TF
Location: 20084 - 21595 (-)
Gene ID: Rep_2060_c_28_14
Type: TC
Location: 21576 - 23417 (-)
Type: TC
Location: 21576 - 23417 (-)
Gene ID: Rep_2060_c_28_15
Type: CAZyme
Location: 23578 - 30588 (-)
Type: CAZyme
Location: 23578 - 30588 (-)
Gene ID: Rep_2060_c_28_16
Type: pfam
Location: 31125 - 31391 (-)
Type: pfam
Location: 31125 - 31391 (-)
Gene ID: Rep_2060_c_28_17
Type: TC
Location: 31458 - 31910 (-)
Type: TC
Location: 31458 - 31910 (-)
Gene ID: Rep_2060_c_28_18
Type: pfam
Location: 31930 - 32217 (-)
Type: pfam
Location: 31930 - 32217 (-)
Gene ID: Rep_2060_c_28_19
Type: TC
Location: 32454 - 32822 (-)
Type: TC
Location: 32454 - 32822 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Robinsoniella
Species
Robinsoniella sp900539655
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.