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Cluster: Rep_2060_CGC54

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_2060_c_26 Rep_2060_c_26_5 3937 5301 + 3.A.1.1.40
TC Rep_2060_c_26 Rep_2060_c_26_6 5381 6283 + 3.A.1.1.36
TC Rep_2060_c_26 Rep_2060_c_26_7 6296 7111 + 3.A.1.1.39
CAZyme Rep_2060_c_26 Rep_2060_c_26_8 7191 8504 + GH4
NULL(UNKNOWN) Rep_2060_c_26 Rep_2060_c_26_9 8521 9756 + NULL(UNKNOWN)
[View Structural Homologs]
TF Rep_2060_c_26 Rep_2060_c_26_10 9910 11400 - HTH_AraC | HTH_AraC
TC Rep_2060_c_26 Rep_2060_c_26_11 11393 13129 - 9.B.33.1.1
pfam Rep_2060_c_26 Rep_2060_c_26_12 13195 14268 - URO-D
TC Rep_2060_c_26 Rep_2060_c_26_13 14314 15144 - 3.A.1.1.42
TC Rep_2060_c_26 Rep_2060_c_26_14 15145 16002 - 3.A.1.1.42
Gene ID: Rep_2060_c_26_5
Type: TC
Location: 3937 - 5301 (+)
Gene ID: Rep_2060_c_26_6
Type: TC
Location: 5381 - 6283 (+)
Gene ID: Rep_2060_c_26_7
Type: TC
Location: 6296 - 7111 (+)
Gene ID: Rep_2060_c_26_8
Type: CAZyme
Location: 7191 - 8504 (+)
Gene ID: Rep_2060_c_26_9
Type:
Location: 8521 - 9756 (+)
Gene ID: Rep_2060_c_26_10
Type: TF
Location: 9910 - 11400 (-)
Gene ID: Rep_2060_c_26_11
Type: TC
Location: 11393 - 13129 (-)
Gene ID: Rep_2060_c_26_12
Type: pfam
Location: 13195 - 14268 (-)
Gene ID: Rep_2060_c_26_13
Type: TC
Location: 14314 - 15144 (-)
Gene ID: Rep_2060_c_26_14
Type: TC
Location: 15145 - 16002 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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