Cluster: Rep_2060_CGC53
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 3
- Substrate:
- Genome ID: Rep_2060
- CGC Family ID: CGCFAM_02071
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_2060_c_25 | Rep_2060_c_25_32 | 42385 | 47604 | + | CBM35 | CBM35 | GH39 |
| STP | Rep_2060_c_25 | Rep_2060_c_25_33 | 47797 | 49221 | + | SBP_bac_1 |
| TC | Rep_2060_c_25 | Rep_2060_c_25_34 | 49348 | 50238 | + | 3.A.1.1.42 |
| TC | Rep_2060_c_25 | Rep_2060_c_25_35 | 50238 | 51104 | + | 3.A.1.1.34 |
| CAZyme | Rep_2060_c_25 | Rep_2060_c_25_36 | 51336 | 53441 | + | GH36 |
| TF | Rep_2060_c_25 | Rep_2060_c_25_37 | 53591 | 54670 | - | HTH_AraC | HTH_AraC |
| CAZyme | Rep_2060_c_25 | Rep_2060_c_25_38 | 54934 | 59016 | + | GH106 |
Gene ID: Rep_2060_c_25_32
Type: CAZyme
Location: 42385 - 47604 (+)
Type: CAZyme
Location: 42385 - 47604 (+)
Gene ID: Rep_2060_c_25_33
Type: STP
Location: 47797 - 49221 (+)
Type: STP
Location: 47797 - 49221 (+)
Gene ID: Rep_2060_c_25_34
Type: TC
Location: 49348 - 50238 (+)
Type: TC
Location: 49348 - 50238 (+)
Gene ID: Rep_2060_c_25_35
Type: TC
Location: 50238 - 51104 (+)
Type: TC
Location: 50238 - 51104 (+)
Gene ID: Rep_2060_c_25_36
Type: CAZyme
Location: 51336 - 53441 (+)
Type: CAZyme
Location: 51336 - 53441 (+)
Gene ID: Rep_2060_c_25_37
Type: TF
Location: 53591 - 54670 (-)
Type: TF
Location: 53591 - 54670 (-)
Gene ID: Rep_2060_c_25_38
Type: CAZyme
Location: 54934 - 59016 (+)
Type: CAZyme
Location: 54934 - 59016 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Robinsoniella
Species
Robinsoniella sp900539655
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.