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Cluster: Rep_2060_CGC52

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_2060_c_23 Rep_2060_c_23_25 48680 49921 - 2.A.37.3.3
STP Rep_2060_c_23 Rep_2060_c_23_26 49918 50544 - TetR_N
TC Rep_2060_c_23 Rep_2060_c_23_27 50867 51982 + 3.A.1.2.3
TC Rep_2060_c_23 Rep_2060_c_23_28 52060 53559 + 3.A.1.2.3
TC Rep_2060_c_23 Rep_2060_c_23_29 53616 54845 + 3.A.1.2.3
TF Rep_2060_c_23 Rep_2060_c_23_30 54847 55707 - HTH_AraC | HTH_AraC
CAZyme Rep_2060_c_23 Rep_2060_c_23_31 55839 59009 + GH106
Gene ID: Rep_2060_c_23_25
Type: TC
Location: 48680 - 49921 (-)
Gene ID: Rep_2060_c_23_26
Type: STP
Location: 49918 - 50544 (-)
Gene ID: Rep_2060_c_23_27
Type: TC
Location: 50867 - 51982 (+)
Gene ID: Rep_2060_c_23_28
Type: TC
Location: 52060 - 53559 (+)
Gene ID: Rep_2060_c_23_29
Type: TC
Location: 53616 - 54845 (+)
Gene ID: Rep_2060_c_23_30
Type: TF
Location: 54847 - 55707 (-)
Gene ID: Rep_2060_c_23_31
Type: CAZyme
Location: 55839 - 59009 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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