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Cluster: Rep_2060_CGC51

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_2060_c_23 Rep_2060_c_23_4 6156 7136 + 3.A.1.1.10
TC Rep_2060_c_23 Rep_2060_c_23_5 7151 8041 + 3.A.1.1.29
pfam Rep_2060_c_23 Rep_2060_c_23_6 8097 9737 + DUF3502
pfam Rep_2060_c_23 Rep_2060_c_23_7 9749 10957 + GFO_IDH_MocA | GFO_IDH_MocA_C | GFO_IDH_MocA_C3
CAZyme Rep_2060_c_23 Rep_2060_c_23_8 11082 16007 + GH141
CAZyme Rep_2060_c_23 Rep_2060_c_23_9 16273 22851 + CBM32
TF Rep_2060_c_23 Rep_2060_c_23_10 23053 23739 + Trans_reg_C
STP Rep_2060_c_23 Rep_2060_c_23_11 23726 24715 + HATPase_c | HisKA
TC Rep_2060_c_23 Rep_2060_c_23_12 24831 25520 + 3.A.1.125.3
pfam Rep_2060_c_23 Rep_2060_c_23_13 25517 28099 + FtsX | FtsX | MacB_PCD
NULL(UNKNOWN) Rep_2060_c_23 Rep_2060_c_23_14 28432 28551 + NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_2060_c_23 Rep_2060_c_23_15 28548 30308 + 8.A.59.2.1
TC Rep_2060_c_23 Rep_2060_c_23_16 30502 31410 + 3.A.1.1.29
TC Rep_2060_c_23 Rep_2060_c_23_17 31426 32319 + 3.A.1.1.29
STP Rep_2060_c_23 Rep_2060_c_23_18 32380 33924 + SBP_bac_1
CAZyme Rep_2060_c_23 Rep_2060_c_23_19 34015 35145 + GH88
CAZyme Rep_2060_c_23 Rep_2060_c_23_20 35203 36924 + GH154
Gene ID: Rep_2060_c_23_4
Type: TC
Location: 6156 - 7136 (+)
Gene ID: Rep_2060_c_23_5
Type: TC
Location: 7151 - 8041 (+)
Gene ID: Rep_2060_c_23_6
Type: pfam
Location: 8097 - 9737 (+)
Gene ID: Rep_2060_c_23_7
Type: pfam
Location: 9749 - 10957 (+)
Gene ID: Rep_2060_c_23_8
Type: CAZyme
Location: 11082 - 16007 (+)
Gene ID: Rep_2060_c_23_9
Type: CAZyme
Location: 16273 - 22851 (+)
Gene ID: Rep_2060_c_23_10
Type: TF
Location: 23053 - 23739 (+)
Gene ID: Rep_2060_c_23_11
Type: STP
Location: 23726 - 24715 (+)
Gene ID: Rep_2060_c_23_12
Type: TC
Location: 24831 - 25520 (+)
Gene ID: Rep_2060_c_23_13
Type: pfam
Location: 25517 - 28099 (+)
Gene ID: Rep_2060_c_23_14
Type:
Location: 28432 - 28551 (+)
Gene ID: Rep_2060_c_23_15
Type: TC
Location: 28548 - 30308 (+)
Gene ID: Rep_2060_c_23_16
Type: TC
Location: 30502 - 31410 (+)
Gene ID: Rep_2060_c_23_17
Type: TC
Location: 31426 - 32319 (+)
Gene ID: Rep_2060_c_23_18
Type: STP
Location: 32380 - 33924 (+)
Gene ID: Rep_2060_c_23_19
Type: CAZyme
Location: 34015 - 35145 (+)
Gene ID: Rep_2060_c_23_20
Type: CAZyme
Location: 35203 - 36924 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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