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Cluster: Rep_2060_CGC5

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_2060_c_0 Rep_2060_c_0_223 246890 248272 + 3.A.1.1.4
TC Rep_2060_c_0 Rep_2060_c_0_224 248329 249210 + 3.A.1.1.4
TC Rep_2060_c_0 Rep_2060_c_0_225 249203 250009 + 3.A.1.1.4
TF Rep_2060_c_0 Rep_2060_c_0_226 250187 251218 + LacI
CAZyme Rep_2060_c_0 Rep_2060_c_0_227 251340 253361 + GH42
pfam Rep_2060_c_0 Rep_2060_c_0_228 253660 254487 + PRD | PRD | CAT_RBD
TC Rep_2060_c_0 Rep_2060_c_0_229 254506 254985 + 4.A.1.2.2
STP Rep_2060_c_0 Rep_2060_c_0_230 254995 255243 + PTS-HPr
TC Rep_2060_c_0 Rep_2060_c_0_231 255320 256771 + 4.A.1.1.7
Gene ID: Rep_2060_c_0_223
Type: TC
Location: 246890 - 248272 (+)
Gene ID: Rep_2060_c_0_224
Type: TC
Location: 248329 - 249210 (+)
Gene ID: Rep_2060_c_0_225
Type: TC
Location: 249203 - 250009 (+)
Gene ID: Rep_2060_c_0_226
Type: TF
Location: 250187 - 251218 (+)
Gene ID: Rep_2060_c_0_227
Type: CAZyme
Location: 251340 - 253361 (+)
Gene ID: Rep_2060_c_0_228
Type: pfam
Location: 253660 - 254487 (+)
Gene ID: Rep_2060_c_0_229
Type: TC
Location: 254506 - 254985 (+)
Gene ID: Rep_2060_c_0_230
Type: STP
Location: 254995 - 255243 (+)
Gene ID: Rep_2060_c_0_231
Type: TC
Location: 255320 - 256771 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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