Cluster: Rep_2060_CGC49
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 5
- Substrate:
- Genome ID: Rep_2060
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_2060_c_21 | Rep_2060_c_21_15 | 13975 | 14913 | - | GT2 |
| pfam | Rep_2060_c_21 | Rep_2060_c_21_16 | 14918 | 16357 | - | LytR_cpsA_psr |
| TC | Rep_2060_c_21 | Rep_2060_c_21_17 | 16383 | 17783 | - | 9.B.18.1.1 |
| CAZyme | Rep_2060_c_21 | Rep_2060_c_21_18 | 17884 | 18846 | - | GT2 |
| CAZyme | Rep_2060_c_21 | Rep_2060_c_21_19 | 18917 | 20932 | - | GT2 |
| STP | Rep_2060_c_21 | Rep_2060_c_21_20 | 20925 | 22139 | - | Aminotran_1_2 |
| pfam | Rep_2060_c_21 | Rep_2060_c_21_21 | 22111 | 24876 | - | YfhO |
| CAZyme | Rep_2060_c_21 | Rep_2060_c_21_22 | 25051 | 27498 | - | GT2 | GT2 |
| CAZyme | Rep_2060_c_21 | Rep_2060_c_21_23 | 27535 | 30579 | - | GT2 | GT2 |
| pfam | Rep_2060_c_21 | Rep_2060_c_21_24 | 30639 | 31559 | - | RrnaAD | MTS | Methyltransf_11 | Methyltransf_12 | Methyltransf_23 | Methyltransf_25 | Methyltransf_31 |
| TC | Rep_2060_c_21 | Rep_2060_c_21_25 | 31756 | 33051 | - | 3.A.1.103.6 |
| TC | Rep_2060_c_21 | Rep_2060_c_21_26 | 33067 | 33873 | - | 3.A.1.104.1 |
Gene ID: Rep_2060_c_21_15
Type: CAZyme
Location: 13975 - 14913 (-)
Type: CAZyme
Location: 13975 - 14913 (-)
Gene ID: Rep_2060_c_21_16
Type: pfam
Location: 14918 - 16357 (-)
Type: pfam
Location: 14918 - 16357 (-)
Gene ID: Rep_2060_c_21_17
Type: TC
Location: 16383 - 17783 (-)
Type: TC
Location: 16383 - 17783 (-)
Gene ID: Rep_2060_c_21_18
Type: CAZyme
Location: 17884 - 18846 (-)
Type: CAZyme
Location: 17884 - 18846 (-)
Gene ID: Rep_2060_c_21_19
Type: CAZyme
Location: 18917 - 20932 (-)
Type: CAZyme
Location: 18917 - 20932 (-)
Gene ID: Rep_2060_c_21_20
Type: STP
Location: 20925 - 22139 (-)
Type: STP
Location: 20925 - 22139 (-)
Gene ID: Rep_2060_c_21_21
Type: pfam
Location: 22111 - 24876 (-)
Type: pfam
Location: 22111 - 24876 (-)
Gene ID: Rep_2060_c_21_22
Type: CAZyme
Location: 25051 - 27498 (-)
Type: CAZyme
Location: 25051 - 27498 (-)
Gene ID: Rep_2060_c_21_23
Type: CAZyme
Location: 27535 - 30579 (-)
Type: CAZyme
Location: 27535 - 30579 (-)
Gene ID: Rep_2060_c_21_24
Type: pfam
Location: 30639 - 31559 (-)
Type: pfam
Location: 30639 - 31559 (-)
Gene ID: Rep_2060_c_21_25
Type: TC
Location: 31756 - 33051 (-)
Type: TC
Location: 31756 - 33051 (-)
Gene ID: Rep_2060_c_21_26
Type: TC
Location: 33067 - 33873 (-)
Type: TC
Location: 33067 - 33873 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Robinsoniella
Species
Robinsoniella sp900539655
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.