dbCAN Logo

Cluster: Rep_2060_CGC46

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_2060_c_20 Rep_2060_c_20_2 2002 2898 + 3.A.1.1.36
TC Rep_2060_c_20 Rep_2060_c_20_3 2895 3719 + 3.A.1.1.36
CAZyme Rep_2060_c_20 Rep_2060_c_20_4 3918 5705 + GH2
STP Rep_2060_c_20 Rep_2060_c_20_5 5832 7268 + SBP_bac_1
TC Rep_2060_c_20 Rep_2060_c_20_6 7436 8293 + 3.A.1.1.7
TC Rep_2060_c_20 Rep_2060_c_20_7 8296 9126 + 3.A.1.1.41
TC Rep_2060_c_20 Rep_2060_c_20_8 9237 11027 + 9.B.33.1.1
TF Rep_2060_c_20 Rep_2060_c_20_9 11078 12580 + HTH_AraC | HTH_AraC
CAZyme Rep_2060_c_20 Rep_2060_c_20_10 12585 15737 + GH106
TC Rep_2060_c_20 Rep_2060_c_20_11 16043 17032 + 1.A.33.1.5
TC Rep_2060_c_20 Rep_2060_c_20_12 17236 19506 + 3.A.7.16.1
TC Rep_2060_c_20 Rep_2060_c_20_13 19634 20353 + 3.A.11.1.4
Gene ID: Rep_2060_c_20_2
Type: TC
Location: 2002 - 2898 (+)
Gene ID: Rep_2060_c_20_3
Type: TC
Location: 2895 - 3719 (+)
Gene ID: Rep_2060_c_20_4
Type: CAZyme
Location: 3918 - 5705 (+)
Gene ID: Rep_2060_c_20_5
Type: STP
Location: 5832 - 7268 (+)
Gene ID: Rep_2060_c_20_6
Type: TC
Location: 7436 - 8293 (+)
Gene ID: Rep_2060_c_20_7
Type: TC
Location: 8296 - 9126 (+)
Gene ID: Rep_2060_c_20_8
Type: TC
Location: 9237 - 11027 (+)
Gene ID: Rep_2060_c_20_9
Type: TF
Location: 11078 - 12580 (+)
Gene ID: Rep_2060_c_20_10
Type: CAZyme
Location: 12585 - 15737 (+)
Gene ID: Rep_2060_c_20_11
Type: TC
Location: 16043 - 17032 (+)
Gene ID: Rep_2060_c_20_12
Type: TC
Location: 17236 - 19506 (+)
Gene ID: Rep_2060_c_20_13
Type: TC
Location: 19634 - 20353 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

← Back to Cluster List