Cluster: Rep_2060_CGC45
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate: host glycan
- Genome ID: Rep_2060
- CGC Family ID: CGCFAM_00446
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_2060_c_19 | Rep_2060_c_19_47 | 61180 | 62013 | - | 3.A.1.1.18 |
| TC | Rep_2060_c_19 | Rep_2060_c_19_48 | 62025 | 62912 | - | 3.A.1.1.25 |
| STP | Rep_2060_c_19 | Rep_2060_c_19_49 | 63038 | 64399 | - | SBP_bac_1 |
| TF | Rep_2060_c_19 | Rep_2060_c_19_50 | 64517 | 66028 | - | HTH_AraC |
| TC | Rep_2060_c_19 | Rep_2060_c_19_51 | 66025 | 67764 | - | 8.A.59.2.1 |
| CAZyme | Rep_2060_c_19 | Rep_2060_c_19_52 | 67908 | 74459 | - | GH95 |
Gene ID: Rep_2060_c_19_47
Type: TC
Location: 61180 - 62013 (-)
Type: TC
Location: 61180 - 62013 (-)
Gene ID: Rep_2060_c_19_48
Type: TC
Location: 62025 - 62912 (-)
Type: TC
Location: 62025 - 62912 (-)
Gene ID: Rep_2060_c_19_49
Type: STP
Location: 63038 - 64399 (-)
Type: STP
Location: 63038 - 64399 (-)
Gene ID: Rep_2060_c_19_50
Type: TF
Location: 64517 - 66028 (-)
Type: TF
Location: 64517 - 66028 (-)
Gene ID: Rep_2060_c_19_51
Type: TC
Location: 66025 - 67764 (-)
Type: TC
Location: 66025 - 67764 (-)
Gene ID: Rep_2060_c_19_52
Type: CAZyme
Location: 67908 - 74459 (-)
Type: CAZyme
Location: 67908 - 74459 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Robinsoniella
Species
Robinsoniella sp900539655
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.