Cluster: Rep_2060_CGC42
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_2060
- CGC Family ID: CGCFAM_01556
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_2060_c_18 | Rep_2060_c_18_36 | 44734 | 46491 | + | 8.A.59.2.1 |
| TF | Rep_2060_c_18 | Rep_2060_c_18_37 | 46495 | 48021 | + | HTH_AraC |
| STP | Rep_2060_c_18 | Rep_2060_c_18_38 | 48152 | 49555 | + | SBP_bac_1 |
| TC | Rep_2060_c_18 | Rep_2060_c_18_39 | 49648 | 50544 | + | 3.A.1.1.41 |
| TC | Rep_2060_c_18 | Rep_2060_c_18_40 | 50557 | 51420 | + | 3.A.1.1.6 |
| CAZyme | Rep_2060_c_18 | Rep_2060_c_18_41 | 51524 | 54343 | + | CBM67 | GH78 |
Gene ID: Rep_2060_c_18_36
Type: TC
Location: 44734 - 46491 (+)
Type: TC
Location: 44734 - 46491 (+)
Gene ID: Rep_2060_c_18_37
Type: TF
Location: 46495 - 48021 (+)
Type: TF
Location: 46495 - 48021 (+)
Gene ID: Rep_2060_c_18_38
Type: STP
Location: 48152 - 49555 (+)
Type: STP
Location: 48152 - 49555 (+)
Gene ID: Rep_2060_c_18_39
Type: TC
Location: 49648 - 50544 (+)
Type: TC
Location: 49648 - 50544 (+)
Gene ID: Rep_2060_c_18_40
Type: TC
Location: 50557 - 51420 (+)
Type: TC
Location: 50557 - 51420 (+)
Gene ID: Rep_2060_c_18_41
Type: CAZyme
Location: 51524 - 54343 (+)
Type: CAZyme
Location: 51524 - 54343 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Robinsoniella
Species
Robinsoniella sp900539655
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.