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Cluster: Rep_2060_CGC39

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_2060_c_17 Rep_2060_c_17_4 2087 3487 + 2.A.25.1.4
STP Rep_2060_c_17 Rep_2060_c_17_5 4099 4671 - ANTAR | Response_reg
pfam Rep_2060_c_17 Rep_2060_c_17_6 4733 6049 - Gln-synt_C | Gln-synt_N
TC Rep_2060_c_17 Rep_2060_c_17_7 6406 7125 + 3.A.1.122.14
pfam Rep_2060_c_17 Rep_2060_c_17_8 7133 11242 + FtsX | FtsX
pfam Rep_2060_c_17 Rep_2060_c_17_9 11301 12701 + Methyltr_RsmB-F | Methyltranf_PUA | Methyltr_RsmF_N | RsmF_methylt_CI
CAZyme Rep_2060_c_17 Rep_2060_c_17_10 12984 20729 + GH43_22 | GH43_22
CAZyme Rep_2060_c_17 Rep_2060_c_17_11 20872 23112 + CBM42 | GH43_29
pfam Rep_2060_c_17 Rep_2060_c_17_12 23130 26003 + Big_2 | Laminin_G_3 | Laminin_G_3 | aBig_2
CAZyme Rep_2060_c_17 Rep_2060_c_17_13 26074 29979 + GH43_27
Gene ID: Rep_2060_c_17_4
Type: TC
Location: 2087 - 3487 (+)
Gene ID: Rep_2060_c_17_5
Type: STP
Location: 4099 - 4671 (-)
Gene ID: Rep_2060_c_17_6
Type: pfam
Location: 4733 - 6049 (-)
Gene ID: Rep_2060_c_17_7
Type: TC
Location: 6406 - 7125 (+)
Gene ID: Rep_2060_c_17_8
Type: pfam
Location: 7133 - 11242 (+)
Gene ID: Rep_2060_c_17_9
Type: pfam
Location: 11301 - 12701 (+)
Gene ID: Rep_2060_c_17_10
Type: CAZyme
Location: 12984 - 20729 (+)
Gene ID: Rep_2060_c_17_11
Type: CAZyme
Location: 20872 - 23112 (+)
Gene ID: Rep_2060_c_17_12
Type: pfam
Location: 23130 - 26003 (+)
Gene ID: Rep_2060_c_17_13
Type: CAZyme
Location: 26074 - 29979 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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