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Cluster: Rep_2060_CGC38

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_2060_c_16 Rep_2060_c_16_37 48121 54417 - CBM47 | GH29
CAZyme Rep_2060_c_16 Rep_2060_c_16_38 54435 59711 - GH141
pfam Rep_2060_c_16 Rep_2060_c_16_39 59758 60699 - PMI_typeI_cat | MPI_cupin_dom
CAZyme Rep_2060_c_16 Rep_2060_c_16_40 60712 65802 - GH141
pfam Rep_2060_c_16 Rep_2060_c_16_41 65825 66811 - Hydrolase | HAD_2
CAZyme Rep_2060_c_16 Rep_2060_c_16_42 66873 69674 - GH38
TC Rep_2060_c_16 Rep_2060_c_16_43 69696 70532 - 3.A.1.1.45
TC Rep_2060_c_16 Rep_2060_c_16_44 70532 71398 - 3.A.1.1.7
TC Rep_2060_c_16 Rep_2060_c_16_45 71713 73098 - 3.A.1.1.24
TC Rep_2060_c_16 Rep_2060_c_16_46 73395 75194 + 9.B.33.1.1
Gene ID: Rep_2060_c_16_37
Type: CAZyme
Location: 48121 - 54417 (-)
Gene ID: Rep_2060_c_16_38
Type: CAZyme
Location: 54435 - 59711 (-)
Gene ID: Rep_2060_c_16_39
Type: pfam
Location: 59758 - 60699 (-)
Gene ID: Rep_2060_c_16_40
Type: CAZyme
Location: 60712 - 65802 (-)
Gene ID: Rep_2060_c_16_41
Type: pfam
Location: 65825 - 66811 (-)
Gene ID: Rep_2060_c_16_42
Type: CAZyme
Location: 66873 - 69674 (-)
Gene ID: Rep_2060_c_16_43
Type: TC
Location: 69696 - 70532 (-)
Gene ID: Rep_2060_c_16_44
Type: TC
Location: 70532 - 71398 (-)
Gene ID: Rep_2060_c_16_45
Type: TC
Location: 71713 - 73098 (-)
Gene ID: Rep_2060_c_16_46
Type: TC
Location: 73395 - 75194 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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