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Cluster: Rep_2060_CGC34

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_2060_c_14 Rep_2060_c_14_12 14584 15894 - GH4
STP Rep_2060_c_14 Rep_2060_c_14_13 15913 16953 - SIS | SIS
pfam Rep_2060_c_14 Rep_2060_c_14_14 16969 17889 - BcrAD_BadFG
CAZyme Rep_2060_c_14 Rep_2060_c_14_15 17910 19223 - GH29
TC Rep_2060_c_14 Rep_2060_c_14_16 19233 20075 - 3.A.1.1.47
TC Rep_2060_c_14 Rep_2060_c_14_17 20091 21002 - 3.A.1.1.47
STP Rep_2060_c_14 Rep_2060_c_14_18 21095 22561 - SBP_bac_1
CAZyme Rep_2060_c_14 Rep_2060_c_14_19 22817 30811 - CBM51 | GH98
CAZyme Rep_2060_c_14 Rep_2060_c_14_20 31083 36302 - CBM51 | GH98
Gene ID: Rep_2060_c_14_12
Type: CAZyme
Location: 14584 - 15894 (-)
Gene ID: Rep_2060_c_14_13
Type: STP
Location: 15913 - 16953 (-)
Gene ID: Rep_2060_c_14_14
Type: pfam
Location: 16969 - 17889 (-)
Gene ID: Rep_2060_c_14_15
Type: CAZyme
Location: 17910 - 19223 (-)
Gene ID: Rep_2060_c_14_16
Type: TC
Location: 19233 - 20075 (-)
Gene ID: Rep_2060_c_14_17
Type: TC
Location: 20091 - 21002 (-)
Gene ID: Rep_2060_c_14_18
Type: STP
Location: 21095 - 22561 (-)
Gene ID: Rep_2060_c_14_19
Type: CAZyme
Location: 22817 - 30811 (-)
Gene ID: Rep_2060_c_14_20
Type: CAZyme
Location: 31083 - 36302 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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