Cluster: Rep_2060_CGC3
🧬 Cluster Details
- Gene Count: 17
- CAZyme Count: 4
- Substrate:
- Genome ID: Rep_2060
- CGC Family ID: CGCFAM_08345
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_2060_c_0 | Rep_2060_c_0_132 | 151135 | 152979 | - | 8.A.59.2.1 |
| TC | Rep_2060_c_0 | Rep_2060_c_0_133 | 154285 | 155559 | + | 3.A.1.1.22 |
| TC | Rep_2060_c_0 | Rep_2060_c_0_134 | 155728 | 157095 | + | 3.A.1.1.27 |
| TC | Rep_2060_c_0 | Rep_2060_c_0_135 | 157092 | 157931 | + | 3.A.1.1.27 |
| CAZyme | Rep_2060_c_0 | Rep_2060_c_0_136 | 158011 | 159681 | + | GH13_31 |
| NULL(UNKNOWN) | Rep_2060_c_0 | Rep_2060_c_0_137 | 159824 | 160210 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| STP | Rep_2060_c_0 | Rep_2060_c_0_138 | 160480 | 161937 | + | SBP_bac_1 |
| TC | Rep_2060_c_0 | Rep_2060_c_0_139 | 161994 | 162875 | + | 3.A.1.1.20 |
| TC | Rep_2060_c_0 | Rep_2060_c_0_140 | 163071 | 163907 | + | 3.A.1.1.47 |
| TF | Rep_2060_c_0 | Rep_2060_c_0_141 | 163938 | 164771 | + | HTH_AraC | HTH_AraC |
| TC | Rep_2060_c_0 | Rep_2060_c_0_142 | 164809 | 166581 | + | 8.A.59.2.1 |
| CAZyme | Rep_2060_c_0 | Rep_2060_c_0_143 | 166593 | 168653 | + | GH42 |
| CAZyme | Rep_2060_c_0 | Rep_2060_c_0_144 | 168969 | 178499 | + | CBM40 | CBM40 | GH33 | GH33 |
| TC | Rep_2060_c_0 | Rep_2060_c_0_145 | 178762 | 179613 | + | 2.A.119.2.1 |
| pfam | Rep_2060_c_0 | Rep_2060_c_0_146 | 179688 | 180389 | + | Lactamase_B_3 |
| TF | Rep_2060_c_0 | Rep_2060_c_0_147 | 180527 | 181552 | + | LacI |
| CAZyme | Rep_2060_c_0 | Rep_2060_c_0_148 | 181759 | 183420 | + | GH13_31 |
Gene ID: Rep_2060_c_0_132
Type: TC
Location: 151135 - 152979 (-)
Type: TC
Location: 151135 - 152979 (-)
Gene ID: Rep_2060_c_0_133
Type: TC
Location: 154285 - 155559 (+)
Type: TC
Location: 154285 - 155559 (+)
Gene ID: Rep_2060_c_0_134
Type: TC
Location: 155728 - 157095 (+)
Type: TC
Location: 155728 - 157095 (+)
Gene ID: Rep_2060_c_0_135
Type: TC
Location: 157092 - 157931 (+)
Type: TC
Location: 157092 - 157931 (+)
Gene ID: Rep_2060_c_0_136
Type: CAZyme
Location: 158011 - 159681 (+)
Type: CAZyme
Location: 158011 - 159681 (+)
Gene ID: Rep_2060_c_0_137
Type:
Location: 159824 - 160210 (+)
Type:
Location: 159824 - 160210 (+)
Gene ID: Rep_2060_c_0_138
Type: STP
Location: 160480 - 161937 (+)
Type: STP
Location: 160480 - 161937 (+)
Gene ID: Rep_2060_c_0_139
Type: TC
Location: 161994 - 162875 (+)
Type: TC
Location: 161994 - 162875 (+)
Gene ID: Rep_2060_c_0_140
Type: TC
Location: 163071 - 163907 (+)
Type: TC
Location: 163071 - 163907 (+)
Gene ID: Rep_2060_c_0_141
Type: TF
Location: 163938 - 164771 (+)
Type: TF
Location: 163938 - 164771 (+)
Gene ID: Rep_2060_c_0_142
Type: TC
Location: 164809 - 166581 (+)
Type: TC
Location: 164809 - 166581 (+)
Gene ID: Rep_2060_c_0_143
Type: CAZyme
Location: 166593 - 168653 (+)
Type: CAZyme
Location: 166593 - 168653 (+)
Gene ID: Rep_2060_c_0_144
Type: CAZyme
Location: 168969 - 178499 (+)
Type: CAZyme
Location: 168969 - 178499 (+)
Gene ID: Rep_2060_c_0_145
Type: TC
Location: 178762 - 179613 (+)
Type: TC
Location: 178762 - 179613 (+)
Gene ID: Rep_2060_c_0_146
Type: pfam
Location: 179688 - 180389 (+)
Type: pfam
Location: 179688 - 180389 (+)
Gene ID: Rep_2060_c_0_147
Type: TF
Location: 180527 - 181552 (+)
Type: TF
Location: 180527 - 181552 (+)
Gene ID: Rep_2060_c_0_148
Type: CAZyme
Location: 181759 - 183420 (+)
Type: CAZyme
Location: 181759 - 183420 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Robinsoniella
Species
Robinsoniella sp900539655
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.