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Cluster: Rep_2060_CGC29

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_2060_c_12 Rep_2060_c_12_43 48795 49868 + 3.A.1.11.8
TC Rep_2060_c_12 Rep_2060_c_12_44 49858 50673 + 3.A.1.11.1
TC Rep_2060_c_12 Rep_2060_c_12_45 50673 52544 + 3.A.1.11.7
pfam Rep_2060_c_12 Rep_2060_c_12_46 52557 53063 + Flavin_Reduct
TC Rep_2060_c_12 Rep_2060_c_12_47 53196 54563 - 2.A.22.5.3
pfam Rep_2060_c_12 Rep_2060_c_12_48 54816 55703 + PseudoU_synth_2
pfam Rep_2060_c_12 Rep_2060_c_12_49 55720 56217 - HbpS-like
TC Rep_2060_c_12 Rep_2060_c_12_50 56315 56572 - 8.A.8.1.1
TC Rep_2060_c_12 Rep_2060_c_12_51 56675 58816 - 4.A.1.1.9
pfam Rep_2060_c_12 Rep_2060_c_12_52 58968 59804 - PRD | PRD | CAT_RBD
CAZyme Rep_2060_c_12 Rep_2060_c_12_53 60105 65627 - CBM51 | GH2
Gene ID: Rep_2060_c_12_43
Type: TC
Location: 48795 - 49868 (+)
Gene ID: Rep_2060_c_12_44
Type: TC
Location: 49858 - 50673 (+)
Gene ID: Rep_2060_c_12_45
Type: TC
Location: 50673 - 52544 (+)
Gene ID: Rep_2060_c_12_46
Type: pfam
Location: 52557 - 53063 (+)
Gene ID: Rep_2060_c_12_47
Type: TC
Location: 53196 - 54563 (-)
Gene ID: Rep_2060_c_12_48
Type: pfam
Location: 54816 - 55703 (+)
Gene ID: Rep_2060_c_12_49
Type: pfam
Location: 55720 - 56217 (-)
Gene ID: Rep_2060_c_12_50
Type: TC
Location: 56315 - 56572 (-)
Gene ID: Rep_2060_c_12_51
Type: TC
Location: 56675 - 58816 (-)
Gene ID: Rep_2060_c_12_52
Type: pfam
Location: 58968 - 59804 (-)
Gene ID: Rep_2060_c_12_53
Type: CAZyme
Location: 60105 - 65627 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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