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Cluster: Rep_2060_CGC28

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_2060_c_11 Rep_2060_c_11_72 52497 58277 - GH123
CAZyme Rep_2060_c_11 Rep_2060_c_11_73 58741 60030 - GH29
CAZyme Rep_2060_c_11 Rep_2060_c_11_74 60124 61167 - GH18
CAZyme Rep_2060_c_11 Rep_2060_c_11_75 61154 63655 - GH2
CAZyme Rep_2060_c_11 Rep_2060_c_11_76 63696 65570 - GH20
CAZyme Rep_2060_c_11 Rep_2060_c_11_77 65582 67015 - GH29
STP Rep_2060_c_11 Rep_2060_c_11_78 67067 68734 - SBP_bac_1
TC Rep_2060_c_11 Rep_2060_c_11_79 68812 69717 - 3.A.1.1.10
TC Rep_2060_c_11 Rep_2060_c_11_80 69736 70686 - 3.A.1.1.10
Gene ID: Rep_2060_c_11_72
Type: CAZyme
Location: 52497 - 58277 (-)
Gene ID: Rep_2060_c_11_73
Type: CAZyme
Location: 58741 - 60030 (-)
Gene ID: Rep_2060_c_11_74
Type: CAZyme
Location: 60124 - 61167 (-)
Gene ID: Rep_2060_c_11_75
Type: CAZyme
Location: 61154 - 63655 (-)
Gene ID: Rep_2060_c_11_76
Type: CAZyme
Location: 63696 - 65570 (-)
Gene ID: Rep_2060_c_11_77
Type: CAZyme
Location: 65582 - 67015 (-)
Gene ID: Rep_2060_c_11_78
Type: STP
Location: 67067 - 68734 (-)
Gene ID: Rep_2060_c_11_79
Type: TC
Location: 68812 - 69717 (-)
Gene ID: Rep_2060_c_11_80
Type: TC
Location: 69736 - 70686 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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