Cluster: Rep_2060_CGC25
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 2
- Substrate:
- Genome ID: Rep_2060
- CGC Family ID: CGCFAM_04161
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_2060_c_10 | Rep_2060_c_10_31 | 49825 | 51072 | + | GH29 |
| CAZyme | Rep_2060_c_10 | Rep_2060_c_10_32 | 51156 | 53057 | - | GH146 |
| TF | Rep_2060_c_10 | Rep_2060_c_10_33 | 53178 | 54209 | - | LacI |
| pfam | Rep_2060_c_10 | Rep_2060_c_10_34 | 54236 | 55456 | - | Amidohydro_2 |
| TC | Rep_2060_c_10 | Rep_2060_c_10_35 | 55493 | 56332 | - | 3.A.1.1.45 |
| TC | Rep_2060_c_10 | Rep_2060_c_10_36 | 56332 | 57174 | - | 3.A.1.1.45 |
| TC | Rep_2060_c_10 | Rep_2060_c_10_37 | 57241 | 58674 | - | 3.A.1.1.45 |
Gene ID: Rep_2060_c_10_31
Type: CAZyme
Location: 49825 - 51072 (+)
Type: CAZyme
Location: 49825 - 51072 (+)
Gene ID: Rep_2060_c_10_32
Type: CAZyme
Location: 51156 - 53057 (-)
Type: CAZyme
Location: 51156 - 53057 (-)
Gene ID: Rep_2060_c_10_33
Type: TF
Location: 53178 - 54209 (-)
Type: TF
Location: 53178 - 54209 (-)
Gene ID: Rep_2060_c_10_34
Type: pfam
Location: 54236 - 55456 (-)
Type: pfam
Location: 54236 - 55456 (-)
Gene ID: Rep_2060_c_10_35
Type: TC
Location: 55493 - 56332 (-)
Type: TC
Location: 55493 - 56332 (-)
Gene ID: Rep_2060_c_10_36
Type: TC
Location: 56332 - 57174 (-)
Type: TC
Location: 56332 - 57174 (-)
Gene ID: Rep_2060_c_10_37
Type: TC
Location: 57241 - 58674 (-)
Type: TC
Location: 57241 - 58674 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Robinsoniella
Species
Robinsoniella sp900539655
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.