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Cluster: Rep_2060_CGC24

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_2060_c_10 Rep_2060_c_10_10 7037 8113 - GH43_24
CAZyme Rep_2060_c_10 Rep_2060_c_10_11 8192 11200 - CBM67 | GH78
CAZyme Rep_2060_c_10 Rep_2060_c_10_12 11282 13642 - GH78
pfam Rep_2060_c_10 Rep_2060_c_10_13 13775 16396 - LRR_5
CAZyme Rep_2060_c_10 Rep_2060_c_10_14 16640 19045 - GH3
pfam Rep_2060_c_10 Rep_2060_c_10_15 19101 20015 - IU_nuc_hydro
TC Rep_2060_c_10 Rep_2060_c_10_16 20061 20960 - 3.A.1.1.29
TC Rep_2060_c_10 Rep_2060_c_10_17 20972 21913 - 3.A.1.1.9
Gene ID: Rep_2060_c_10_10
Type: CAZyme
Location: 7037 - 8113 (-)
Gene ID: Rep_2060_c_10_11
Type: CAZyme
Location: 8192 - 11200 (-)
Gene ID: Rep_2060_c_10_12
Type: CAZyme
Location: 11282 - 13642 (-)
Gene ID: Rep_2060_c_10_13
Type: pfam
Location: 13775 - 16396 (-)
Gene ID: Rep_2060_c_10_14
Type: CAZyme
Location: 16640 - 19045 (-)
Gene ID: Rep_2060_c_10_15
Type: pfam
Location: 19101 - 20015 (-)
Gene ID: Rep_2060_c_10_16
Type: TC
Location: 20061 - 20960 (-)
Gene ID: Rep_2060_c_10_17
Type: TC
Location: 20972 - 21913 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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